Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01579 ATGGAGATGGAAGGGTTGGATTCTAATAATTCTACCCACAACGGCATAGCCAAGGGCAAACGCACCAAGAGGATGAGGCTTTTGTCCCCTTGCGGTGTTGTTGCTACCACTGTCACCTCGAGCACTTCGAGTGCCTCCTCCACCACAACCTACGAGAGCGAAGAGGAAGACATGGCGAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCATCATCATCCTCCTCGTCACGACAAGCAACAAGTTGAAGATCATGGTCTTGAGAATTGTGATGGTGTCATCAAGACAGAAGAAAAGGGTAACAACAACAGCGACAACGTTAACGCTACCCCCACCGCAACAACAACAACCGCTGCTACTACCAAAGTTGGTTTCTATATTTATGAGTGCAAAACGTGTAACCGAACCTTCCCTTCGTTTCAAGCGCTGGGTGGACACAGGGCGAGTCACAAAAAGCCAAAACTCGCGGCTGAAGAGAAAAAACAACCATTGCCACCACCAGCGCAACCGTCACCACCGTCTCAATTGCAACACATGATTGTTACCAACTATGATCGGTTTGAGGAGGGTAACGTTAAAAGTGGTCCTCCAATTTCCCTTCAATTGGGTAATAATGGAAACAACAAGGGTAAGATTCACGAGTGTTCCATTTGTGGTTCTGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCCACAAACACCAATACTACTGTTGTTGATACAACAAGGTGTAACACTGTTTCCACCACTATCATCACCACGGCTCCACCAAGGAATATTTTGCAATTGGATCTTAACCTCCCAGCACCCGAAGACGATATCCGGGAGGCTAAGTTCCAATTTGCAACAACAACAACTCAGGTGCTGGTTGGTACTCCGGCTTTGGTGGATTGTCATTATTAG 927 0.4714 MEMEGLDSNNSTHNGIAKGKRTKRMRLLSPCGVVATTVTSSTSSASSTTTYESEEEDMANCLILLAQGGESHHHPPRHDKQQVEDHGLENCDGVIKTEEKGNNNSDNVNATPTATTTTAATTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLAAEEKKQPLPPPAQPSPPSQLQHMIVTNYDRFEEGNVKSGPPISLQLGNNGNNKGKIHECSICGSEFTSGQALGGHMRRHRASTNTNTTVVDTTRCNTVSTTIITTAPPRNILQLDLNLPAPEDDIREAKFQFATTTTQVLVGTPALVDCHY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01579 308 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Gma11g01579 308 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Gma11g01579 308 MobiDBLite consensus disorder prediction 1 16 - -
Gma11g01579 308 MobiDBLite consensus disorder prediction 1 23 - -
Gma11g01579 308 Pfam C2H2-type zinc finger 129 154 - -
Gma11g01579 308 Pfam C2H2-type zinc finger 214 238 - -
Gma11g01579 308 SMART c2h2final6 214 236 IPR013087 -
Gma11g01579 308 SMART c2h2final6 129 151 IPR013087 -
Gma11g01579 308 SUPERFAMILY beta-beta-alpha zinc fingers 128 236 IPR036236 -
Gma11g01579 308 Gene3D Classic Zinc Finger 127 236 - -
Gma11g01579 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Gma11g01579 308 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 308 - -
Gma11g01579 308 MobiDBLite consensus disorder prediction 145 176 - -
Gma11g01579 308 PANTHER ZINC FINGER PROTEIN ZAT5 1 308 - -
Gma11g01579 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01579 Gma-Chr11 16967680 16969026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01579 3 308 C2H2 Transcription Factor Family AT2G28200 41.194 3.13e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g01579 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01579 - - gmx:100782408 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01579 11 16967680 16969026 Gma11g01579 11 16967680 16969026 ECH
Gma11g01579 11 16967680 16969026 Gma03g01708 03 43256452 43257512 ECH
Gma11g01579 11 16967680 16969026 Gma12g00726 12 6532347 6533294 ECH
Gma03g01708 03 43256452 43257512 Gma11g01579 11 16967680 16969026 ECH
Gma19g01758 19 46895445 46896305 Gma11g01579 11 16967680 16969026 ECH
Gma10g00543 10 5590845 5592009 Gma11g01579 11 16967680 16969026 ECH
Gma13g01255 13 26863900 26864766 Gma11g01579 11 16967680 16969026 ECH
Gma12g00726 12 6532347 6533294 Gma11g01579 11 16967680 16969026 GST
Gma13g02863 13 43134543 43135859 Gma11g01579 11 16967680 16969026 PCT
Gma12g01686 12 37304460 37305861 Gma11g01579 11 16967680 16969026 PCT
Gma11g01579 11 16967680 16969026 Gma13g02863 13 43134543 43135859 PCT
Gma11g01579 11 16967680 16969026 Gma12g01686 12 37304460 37305861 PCT