Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma11g01577 | ATGATGCCAAAGGCCACAATATCTACTACCCCCACAAATGATTTTCAAGAACTGCATATGTTTCCTGCAGCAGTGAATAATGAATATTTGGTTTCACCTTCTCTTGAAGCAAGCTCTTCCTCATCACCTTCACACTCATCTTCAAACTCTCTCCTCTTCTACCTCTCACTTCTCAAGGACAAGCTAGGTCAACTCCACAACCTAGTTGGTGTTCTTGTCTCCCCTCAACAAAACCTACCCGAGTCAACTCCAACGGCAATCTCCACCATCAATAACACAATCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGCCAGCAAATGATTTCTAGTTCCCCTTCAGGTACTAATACTATTAATGAATTGCACCAGCAACAAATTGATCATGGTAGATTATTACCACCATCACATCATGAATCAAACTTTATCAACAACAATAGGGGTGTGCCTAGTAACATTAACATAGTCTCACATATAAATAGAGGGCAAAGTTTCTTATCTAATAGTATTGAGGGAGAGGCATCATTGGATTGGTTTGCTGAAAGCTACAATAATAGCAATAGTGGTAATAATTATTTTAACCCTAAGGATGATGAAGCAGCCAACATTATTAACAACATCATGGGGGAGACGAGTGATGACATAATTGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTTAAGCGTGATGCTAATTTGAGGATGCACATGAGGGCACATGGGGAAGAGTACAAAACAAGTGCAGCTTTGCGCAACCCAATGAAGAAAAACAACAAAAAGGAGAGTAATTTGTTGTTTTTAGGTGCAGAAGGAAGTGTGACAAAGAGATATTCGTGCCCTCAACAAGGGTGTAGATGGAACCAAAGGCATGCCAAGTTCCAACCTTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGGAGCCACTGCCCCAAGATGTATATGTGCAATAGGTGCAACCAGAAACAGTTCTCTGTGCTTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACTATCCCAAGTGGCAGTGCTCGTGTGGCACTACGTTTTCTAGGAAGGACAAGCTTATGGGCCATATTACTTTGTTCGCGGGGCACACCCCAGTTCCTAATATTAATGGCATGTCATCATACATGGGAAAATCAGAAGTACAACAGAATAATATTGCTGGTGGTTTAAGATGA | 1233 | 0.4152 | MMPKATISTTPTNDFQELHMFPAAVNNEYLVSPSLEASSSSSPSHSSSNSLLFYLSLLKDKLGQLHNLVGVLVSPQQNLPESTPTAISTINNTIQEIIVAATSMRFTCQQMISSSPSGTNTINELHQQQIDHGRLLPPSHHESNFINNNRGVPSNINIVSHINRGQSFLSNSIEGEASLDWFAESYNNSNSGNNYFNPKDDEAANIINNIMGETSDDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALRNPMKKNNKKESNLLFLGAEGSVTKRYSCPQQGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYMCNRCNQKQFSVLSDLRTHEKHCGDYPKWQCSCGTTFSRKDKLMGHITLFAGHTPVPNINGMSSYMGKSEVQQNNIAGGLR | 410 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma11g01577 | 410 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 232 | 259 | IPR013087 | - | |
Gma11g01577 | 410 | SUPERFAMILY | beta-beta-alpha zinc fingers | 230 | 257 | IPR036236 | - | |
Gma11g01577 | 410 | Gene3D | Classic Zinc Finger | 224 | 294 | - | - | |
Gma11g01577 | 410 | Gene3D | Classic Zinc Finger | 327 | 378 | - | - | |
Gma11g01577 | 410 | SMART | c2h2final6 | 329 | 351 | IPR013087 | - | |
Gma11g01577 | 410 | SMART | c2h2final6 | 291 | 324 | IPR013087 | - | |
Gma11g01577 | 410 | SMART | c2h2final6 | 232 | 254 | IPR013087 | - | |
Gma11g01577 | 410 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 234 | 254 | IPR013087 | - | |
Gma11g01577 | 410 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 14 | 399 | IPR044300 | GO:0010044|GO:0010447 | |
Gma11g01577 | 410 | PANTHER | OS08G0562300 PROTEIN | 14 | 399 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma11g01577 | Gma-Chr11 | 16947929 | 16949161 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma11g01577 | 26 | 385 | C2H2 Transcription Factor Family | AT5G22890 | 48.352 | 4.01e-102 | 306 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gma11g01577 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma11g01577 | - | - | gmx:100802399 | 790.03 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma11g01577 | 11 | 16947929 | 16949161 | Gma11g01577 | 11 | 16947929 | 16949161 | ECH | |
Gma12g00728 | 12 | 6548443 | 6549633 | Gma11g01577 | 11 | 16947929 | 16949161 | GST | |
Gma13g02862 | 13 | 43126085 | 43127320 | Gma11g01577 | 11 | 16947929 | 16949161 | PCT | |
Gma12g01688 | 12 | 37318898 | 37320938 | Gma11g01577 | 11 | 16947929 | 16949161 | PCT | |
Gma11g01577 | 11 | 16947929 | 16949161 | Gma13g02862 | 13 | 43126085 | 43127320 | PCT | |
Gma11g01577 | 11 | 16947929 | 16949161 | Gma12g01688 | 12 | 37318898 | 37320938 | PCT |