Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01577 ATGATGCCAAAGGCCACAATATCTACTACCCCCACAAATGATTTTCAAGAACTGCATATGTTTCCTGCAGCAGTGAATAATGAATATTTGGTTTCACCTTCTCTTGAAGCAAGCTCTTCCTCATCACCTTCACACTCATCTTCAAACTCTCTCCTCTTCTACCTCTCACTTCTCAAGGACAAGCTAGGTCAACTCCACAACCTAGTTGGTGTTCTTGTCTCCCCTCAACAAAACCTACCCGAGTCAACTCCAACGGCAATCTCCACCATCAATAACACAATCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGCCAGCAAATGATTTCTAGTTCCCCTTCAGGTACTAATACTATTAATGAATTGCACCAGCAACAAATTGATCATGGTAGATTATTACCACCATCACATCATGAATCAAACTTTATCAACAACAATAGGGGTGTGCCTAGTAACATTAACATAGTCTCACATATAAATAGAGGGCAAAGTTTCTTATCTAATAGTATTGAGGGAGAGGCATCATTGGATTGGTTTGCTGAAAGCTACAATAATAGCAATAGTGGTAATAATTATTTTAACCCTAAGGATGATGAAGCAGCCAACATTATTAACAACATCATGGGGGAGACGAGTGATGACATAATTGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTTAAGCGTGATGCTAATTTGAGGATGCACATGAGGGCACATGGGGAAGAGTACAAAACAAGTGCAGCTTTGCGCAACCCAATGAAGAAAAACAACAAAAAGGAGAGTAATTTGTTGTTTTTAGGTGCAGAAGGAAGTGTGACAAAGAGATATTCGTGCCCTCAACAAGGGTGTAGATGGAACCAAAGGCATGCCAAGTTCCAACCTTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGGAGCCACTGCCCCAAGATGTATATGTGCAATAGGTGCAACCAGAAACAGTTCTCTGTGCTTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACTATCCCAAGTGGCAGTGCTCGTGTGGCACTACGTTTTCTAGGAAGGACAAGCTTATGGGCCATATTACTTTGTTCGCGGGGCACACCCCAGTTCCTAATATTAATGGCATGTCATCATACATGGGAAAATCAGAAGTACAACAGAATAATATTGCTGGTGGTTTAAGATGA 1233 0.4152 MMPKATISTTPTNDFQELHMFPAAVNNEYLVSPSLEASSSSSPSHSSSNSLLFYLSLLKDKLGQLHNLVGVLVSPQQNLPESTPTAISTINNTIQEIIVAATSMRFTCQQMISSSPSGTNTINELHQQQIDHGRLLPPSHHESNFINNNRGVPSNINIVSHINRGQSFLSNSIEGEASLDWFAESYNNSNSGNNYFNPKDDEAANIINNIMGETSDDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALRNPMKKNNKKESNLLFLGAEGSVTKRYSCPQQGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYMCNRCNQKQFSVLSDLRTHEKHCGDYPKWQCSCGTTFSRKDKLMGHITLFAGHTPVPNINGMSSYMGKSEVQQNNIAGGLR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01577 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Gma11g01577 410 SUPERFAMILY beta-beta-alpha zinc fingers 230 257 IPR036236 -
Gma11g01577 410 Gene3D Classic Zinc Finger 224 294 - -
Gma11g01577 410 Gene3D Classic Zinc Finger 327 378 - -
Gma11g01577 410 SMART c2h2final6 329 351 IPR013087 -
Gma11g01577 410 SMART c2h2final6 291 324 IPR013087 -
Gma11g01577 410 SMART c2h2final6 232 254 IPR013087 -
Gma11g01577 410 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Gma11g01577 410 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 14 399 IPR044300 GO:0010044|GO:0010447
Gma11g01577 410 PANTHER OS08G0562300 PROTEIN 14 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01577 Gma-Chr11 16947929 16949161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01577 26 385 C2H2 Transcription Factor Family AT5G22890 48.352 4.01e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g01577 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01577 - - gmx:100802399 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01577 11 16947929 16949161 Gma11g01577 11 16947929 16949161 ECH
Gma12g00728 12 6548443 6549633 Gma11g01577 11 16947929 16949161 GST
Gma13g02862 13 43126085 43127320 Gma11g01577 11 16947929 16949161 PCT
Gma12g01688 12 37318898 37320938 Gma11g01577 11 16947929 16949161 PCT
Gma11g01577 11 16947929 16949161 Gma13g02862 13 43126085 43127320 PCT
Gma11g01577 11 16947929 16949161 Gma12g01688 12 37318898 37320938 PCT