Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01573 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTTCTTTCTTGAGGGACTCCCATTCCCAGTCGTCTGGGAGAGGGGGAGATGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGATCTGGTGAAGTACCTCTTGAACAAAGGAGGGATGGGTTGGTTGCGGACCTTTCACGAGAAGATAGACTGGATATCCAAGAAAGAGGGCAGCGACATGTTATAGAAGATACCGTTTTGGGTGAGAATGAATCTGAAACATGGTCACAGTCGCAAAGTCAGAATGAATCCCATGATGGTAACGAGGACTTAAACAATTCCAGCTGTGAGAACTCTTCTGACTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCTAGGGATCATGTATCAAACATTTCTGAAAGAAATAACGGTTCAAGGGGAGAATGGCTTGGGGAAACCGAGCAGGAAAGGGTGAGAGTTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCGTCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGACACACAAATTGAACGTGTGCGTGATGGACTCATTGTTAACCAGATTGGGGGCCAAACTGAGCATACACGGAGGGGAATACGTAAATTATGTGGCCGACAAGCTATGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAAAGAGAAATTCATGAGTTATTGGACCATCGGGCAGTGTCGCAATTCCCCTATCGAAATCGCATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTTGATAATAACAGGCCCCTTTCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGAAGACAAACTGTATCAGGTCTAAGGGAGGGATTTTTCGCTAGAAGGGAGAATAGTGGTTGCAGTCAAGCAACCAGCAATGCATCTGATACGTCATCTAATGTTGAAATTGATTTTAATACGAATGAACAAATGGGATCAAGCAGTTCACATATAGTCCCAAGTGTACATTCTGAAGAGTCTGACCCTAATGACAGAGGAAGCAATGGACTTGGGGTATCAGGCAGCCAGAACTGGGTACGAGGTACCACATGTGAGAATTTACATTGGCAAGAATCTACTGCTCAAGTAGATGAGTTGCAGCATTTGCCAATTGAATCACTAGATTGTCAATCGTCATTAAGTGCTGATGTTGAAAGAGGGGACAACACTGAGCAAAATCTTGATGTGATGCCAACTGAAGATAATGCTAATGAAATTACCCAACAAAGCTTGCGAATTGAAGATTCAGAGCATTGTAATAATGAAGAATTCAGTGAGGTGCATAATGAGCAATCTGAGTTAGGTGATATAAATAATAGTGAAAACTATTCTTCAAATTACAATATTCATATGGAGGATAATGTTGTTAATGGTGTAAATTGGAATGAATCTGGTGCTCTAGAAGGAGAGCAGCCAGAAGAAGTTTCTGAAAATGAAGGAAGTGAGTGGTATCAGAATAATACCGAATGGAGAAATAGCACTGAGGAAAATGTTGATGATAATCATCTCAGTAATACACCAAATGAGTGGCCTGAAAACAGTTTGGGAAACGAAGATGGAGAAAATTCTCGTCTGCAAGAATCCCATGAAGTGTGGCAAGAAGATGGTGGCTTCCAAGGGGCTGTGGAAAATTGGTTGGGAGGAACTTCTGATCATGAAAGTGCTCCAGTTGGTAGAATTCGTGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGAGAACTTCTTAGTAGGAGAAGTGTCTCTAACCTCCTTGGCAGCAGTTTCCGTGAGAGTCTTGATCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTAACATTGACTGGGAGTTGCAAGAAACAACCCCTTCTTCTGCCTCAGTAGAGCAGGACCTTGAGCAGCAGAGTAGGGATCAAATTGTTGGTCAGGAGGAGGGTACTGTTAATAGTCCACTTAACCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTATTTGGGACCAGCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCATCTAGTAATTGATTTGGAGATTATTAACGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGCTTGAGTTGCAACGATCTATAAGGCAAGAAGTTTCTGCAGCTCTAAATCGCTCTGCTGGTTCATCAGGAATACATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTAAGAAAAGGACTTTGCTGCATATGCTGTGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCGAATGAGTTGCTTCAAAGCAGAAGGAAGTGCCCAATGTGTCAAGCTCCTGTGGTGGAGGTAATGCAGGATGCATTAGAAGAACGCAATGCACCGTATTATGCCAAATAA 2607 0.4288 MAIAGLHSVSVLDSSFLRDSHSQSSGRGGDGRRGSTRSSSLLQMWREIEDEHVVNQVQGRSGEVPLEQRRDGLVADLSREDRLDIQERGQRHVIEDTVLGENESETWSQSQSQNESHDGNEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSNISERNNGSRGEWLGETEQERVRVIREWVQMSSQQRSVSSGENREEPSAEIDTQIERVRDGLIVNQIGGQTEHTRRGIRKLCGRQAMLDMLKKAERERQREIHELLDHRAVSQFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRRQTVSGLREGFFARRENSGCSQATSNASDTSSNVEIDFNTNEQMGSSSSHIVPSVHSEESDPNDRGSNGLGVSGSQNWVRGTTCENLHWQESTAQVDELQHLPIESLDCQSSLSADVERGDNTEQNLDVMPTEDNANEITQQSLRIEDSEHCNNEEFSEVHNEQSELGDINNSENYSSNYNIHMEDNVVNGVNWNESGALEGEQPEEVSENEGSEWYQNNTEWRNSTEENVDDNHLSNTPNEWPENSLGNEDGENSRLQESHEVWQEDGGFQGAVENWLGGTSDHESAPVGRIRGFYFPEDDNVYSVELRELLSRRSVSNLLGSSFRESLDQLIQSYVERQGHANIDWELQETTPSSASVEQDLEQQSRDQIVGQEEGTVNSPLNLPSLPIPPPLPIWDQHHHRDNWSQNDINNQHLVIDLEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIHDCESPEDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVVEVMQDALEERNAPYYAK 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01573 868 Coils Coil 736 763 - -
Gma11g01573 868 Pfam Zinc finger, C3HC4 type (RING finger) 805 852 - -
Gma11g01573 868 MobiDBLite consensus disorder prediction 544 566 - -
Gma11g01573 868 CDD mRING-HC-C3HC5_NEU1 808 846 - -
Gma11g01573 868 SUPERFAMILY RING/U-box 807 853 - -
Gma11g01573 868 Coils Coil 243 263 - -
Gma11g01573 868 MobiDBLite consensus disorder prediction 538 567 - -
Gma11g01573 868 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 855 - -
Gma11g01573 868 MobiDBLite consensus disorder prediction 18 39 - -
Gma11g01573 868 MobiDBLite consensus disorder prediction 192 211 - -
Gma11g01573 868 MobiDBLite consensus disorder prediction 353 368 - -
Gma11g01573 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 862 IPR013083 -
Gma11g01573 868 MobiDBLite consensus disorder prediction 353 389 - -
Gma11g01573 868 ProSiteProfiles Zinc finger RING-type profile. 808 847 IPR001841 -
Gma11g01573 868 MobiDBLite consensus disorder prediction 101 132 - -
Gma11g01573 868 PANTHER PROTEIN, PUTATIVE-RELATED 1 855 - -
Gma11g01573 868 MobiDBLite consensus disorder prediction 99 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01573 Gma-Chr11 16890714 16896478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01573 808 855 C3H Transcription Factor Family AT3G06140 41.667 1.05e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01573 - - gmx:100801329 1652.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01573 11 16890714 16896478 Gma11g01573 11 16890714 16896478 ECH
Gma11g01573 11 16890714 16896478 Gma12g00734 12 6625730 6631961 ECH
Gma12g00734 12 6625730 6631961 Gma11g01573 11 16890714 16896478 GST
Gma13g02857 13 43083615 43089141 Gma11g01573 11 16890714 16896478 PCT
Gma12g01692 12 37365299 37370516 Gma11g01573 11 16890714 16896478 PCT
Gma11g01573 11 16890714 16896478 Gma13g02857 13 43083615 43089141 PCT
Gma11g01573 11 16890714 16896478 Gma12g01692 12 37365299 37370516 PCT