Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01551 ATGGATGCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGTCAGACCGTGACAGTTGACCCAATGGATCCTGTGGATTCATACATACACATATCTCAGGTTGCGCTCGGAGAGGCGAAAAAGGAGAAACCTAATGAGTCTGTGGTTTTGTATTTGAAAGTTGGTGAACAGAAGATTGTCTTGGGAACCCTTTCTAGGGATGGCATTCCTCATCTATCGTTGGATTTGGTTCTGGACTCCGATTCCGAGCTTTCCCACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGGTACAGAGTACTAACTGGCGGCAACAATGCTTCTGATTTTTCTGATAGTGAAGAGGATGAGGAACTTGCATTGGAGGGTCAAGATAATGATGAAGGTGCAAAGGTTACCAAACCTTCTAAACCTGTTCCCAAGATTGGTGCCCCAGCAAAAACAGCTGATCCTAAGAAAGACGAGGgtgatgattctgatgatgaatcggatgatgatcttgctggtgaagatgaatTTGGAAGTTCCGATGAGATGGATGATGACAGCGATAGTGATGAGGAGAGTGATGAAGAGACCCCTGCTAAGAAGGTGGATCAGGGCAAGAAGAGACCAAATGAGTCTGCAGCAAAAACTCCTGTTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTAATGGTAAGAAAAATGTACATGTAGCAACTCCCCATCCTTCGAAGAAAGGTGGAAAGACACCCAACAGTACAAAAGGCCAGTCTCCCAGTTCTGCTGGACAACTATCTTGCGCAAGTTGTAAAAAGTCTTTCACCAACGAAGTCGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGA 870 0.4253 MDAPMEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKEKPNESVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYRVLTGGNNASDFSDSEEDEELALEGQDNDEGAKVTKPSKPVPKIGAPAKTADPKKDEGDDSDDESDDDLAGEDEFGSSDEMDDDSDSDEESDEETPAKKVDQGKKRPNESAAKTPVSAKKAKTATPEKTNGKKNVHVATPHPSKKGGKTPNSTKGQSPSSAGQLSCASCKKSFTNEVGLQQHKKAKHGGQ 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01551 289 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Gma11g01551 289 MobiDBLite consensus disorder prediction 108 264 - -
Gma11g01551 289 MobiDBLite consensus disorder prediction 191 207 - -
Gma11g01551 289 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Gma11g01551 289 MobiDBLite consensus disorder prediction 244 264 - -
Gma11g01551 289 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 5 285 - -
Gma11g01551 289 Gene3D Nucleoplasmin core domain 2 104 - -
Gma11g01551 289 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 5 285 - -
Gma11g01551 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 289 IPR013087 -
Gma11g01551 289 MobiDBLite consensus disorder prediction 156 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01551 Gma-Chr11 16555544 16558180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01551 5 100 C2H2 Transcription Factor Family AT3G44750 54.167 1.55e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g01551 NPL 9.3e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01551 - - gmx:100802220 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01551 11 16555544 16558180 Gma11g01551 11 16555544 16558180 ECH
Gma12g00755 12 6937979 6941872 Gma11g01551 11 16555544 16558180 GST
Gma13g02839 13 42902255 42905597 Gma11g01551 11 16555544 16558180 PCT
Gma12g01711 12 37640956 37644722 Gma11g01551 11 16555544 16558180 PCT
Gma11g01551 11 16555544 16558180 Gma13g02839 13 42902255 42905597 PCT
Gma11g01551 11 16555544 16558180 Gma12g01711 12 37640956 37644722 PCT