Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01538 ATGGAATTTGAGATCATCAACGAATCTCCAGCTGATTCCACTTCACTATCCTCCTCTTCAGTCTCACCATGCACACCACCAAACCCTAATCTGTTATGTGATTCTCCAAATCCACAACCAAATACTAATACCAATCCATCTCACAAGAGAAAAGCAGGTAGAAAGAAGTTTAGGGAGACACGCCACCCAGTGTATAGGGGTGTACGGCAAAGAAACGGGAACAAATGGGTGTGTGAAATAAGGGAACCAATAAAAAAATCAAGGGTTTGGGTAGGGACATACCCTACTCCTGAAATGGCAGCTAGGGCACATGACGTGGCTGTCTTGGCACTTAGTGGCACCTCAGCGAAGTTCAATTTCCCCGATTCAGTTTCGCTTCTTCCACTTGCAAAGTCACACTCTGCTGTAGATATAAGAGAAGCAGCAAAAGCTGCTTCTATTGAAGCTTTCATACCAAACACAGCCTTTTCTTCCTCTCATAACAATTCTAATTTTGGTGAAAATGGGAATGCTGAAGACACTTGTTTGAACATTGGCATGCACGACGATGAGTCAGAAACAATGTTCTTTGATGAGGAGGCAGTGTACAATATGCCAGGTTTGTTGGATAGTATGGCAGAGGGTTTGCTTATTACCCCTCCTTCTATGAAGAGAGCAATGGATTGGGACGATATTGGTTGTGTAATAGACCTTACTCTGTGGACAAATTAA 711 0.4304 MEFEIINESPADSTSLSSSSVSPCTPPNPNLLCDSPNPQPNTNTNPSHKRKAGRKKFRETRHPVYRGVRQRNGNKWVCEIREPIKKSRVWVGTYPTPEMAARAHDVAVLALSGTSAKFNFPDSVSLLPLAKSHSAVDIREAAKAASIEAFIPNTAFSSSHNNSNFGENGNAEDTCLNIGMHDDESETMFFDEEAVYNMPGLLDSMAEGLLITPPSMKRAMDWDDIGCVIDLTLWTN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01538 236 MobiDBLite consensus disorder prediction 1 63 - -
Gma11g01538 236 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Gma11g01538 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 236 IPR045277 GO:0003700
Gma11g01538 236 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gma11g01538 236 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gma11g01538 236 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Gma11g01538 236 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Gma11g01538 236 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Gma11g01538 236 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 236 - -
Gma11g01538 236 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Gma11g01538 236 MobiDBLite consensus disorder prediction 8 28 - -
Gma11g01538 236 MobiDBLite consensus disorder prediction 48 62 - -
Gma11g01538 236 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01538 Gma-Chr11 16411367 16412077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01538 49 235 AP2-EREBP Transcription Factor Family AT4G25490 49.468 2.23e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma11g01538 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01538 - - gmx:100793751 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01538 11 16411367 16412077 Gma11g01538 11 16411367 16412077 ECH
Gma12g00766 12 7075988 7076380 Gma11g01538 11 16411367 16412077 GST
Gma13g02828 13 42792921 42793652 Gma11g01538 11 16411367 16412077 PCT
Gma12g01723 12 37785258 37786016 Gma11g01538 11 16411367 16412077 PCT
Gma11g01538 11 16411367 16412077 Gma13g02828 13 42792921 42793652 PCT
Gma11g01538 11 16411367 16412077 Gma12g01723 12 37785258 37786016 PCT