Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01520 ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAACAAGCGGTAGATGAAGACAATAAGGGAAACTATGCGAAAGCGTTTCAGCTTTACATGAACGCGTTGGAGTATTTCAAAACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACCGAGTATCTCCGCCGGGCCGAGGAGATCCGGGCGGTCCTCGACGACGGGCCCAGCGGCCCGGCCTCCAGCGGGGACGCCGCGGTCGCCACACGGCCCAAGACGAAGCCCAAGGACGGAGGGAAAGACGGAGACGGCGAGGATCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCCGAGATCGTTAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCGGGGTTAGAGAGCGCGAAGCAGGCGCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGGTAAGCGACGACCTTGGAGAGCGTTCTTGTTGTACGGACCGCCGGGGACGGGGAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCTCGCGAAAGTGCACCTTCTATAATATTCGTTGATGAAATAGATTCTCTATGTGGTCAACGTGGAGAAGGGAATGAGAGTGAAGCTTCAAGGCGTATTAAAACTGAGCTTCTGGTGCAGATGCAGGGTGTGGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCTACAAATACACCTTATGCTCTAGACCAGGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTTGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGAATCCTGA 957 0.5141 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSEIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQVHLGDTPHNLAESDFEHLARKTEGFSGSDISVCES 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01520 318 Gene3D - 126 282 IPR027417 -
Gma11g01520 318 SMART smart 2 79 IPR007330 -
Gma11g01520 318 Gene3D - 283 317 - -
Gma11g01520 318 CDD MIT_VPS4 4 76 IPR045253 -
Gma11g01520 318 MobiDBLite consensus disorder prediction 73 110 - -
Gma11g01520 318 SUPERFAMILY MIT domain 2 82 IPR036181 -
Gma11g01520 318 MobiDBLite consensus disorder prediction 91 110 - -
Gma11g01520 318 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Gma11g01520 318 SMART AAA_5 163 312 IPR003593 -
Gma11g01520 318 PANTHER AAA DOMAIN-CONTAINING 1 283 - -
Gma11g01520 318 PANTHER AAA DOMAIN-CONTAINING 283 316 - -
Gma11g01520 318 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 283 - -
Gma11g01520 318 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 283 316 - -
Gma11g01520 318 Pfam ATPase family associated with various cellular activities (AAA) 168 283 IPR003959 GO:0005524|GO:0016887
Gma11g01520 318 Gene3D - 6 75 - -
Gma11g01520 318 CDD AAA 134 282 - -
Gma11g01520 318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 312 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01520 Gma-Chr11 16093474 16097622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01520 162 318 Calmodulin-binding Proteins AT3G56690 34.409 7.10e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01520 K12196 - gmx:100801165 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01520 11 16093474 16097622 Gma11g01520 11 16093474 16097622 ECH
Gma11g01520 11 16093474 16097622 Gma12g00780 12 7265271 7269176 ECH
Gma12g00780 12 7265271 7269176 Gma11g01520 11 16093474 16097622 GST
Gma13g02814 13 42699430 42703354 Gma11g01520 11 16093474 16097622 PCT
Gma12g01736 12 37910679 37918143 Gma11g01520 11 16093474 16097622 PCT
Gma11g01520 11 16093474 16097622 Gma13g02814 13 42699430 42703354 PCT
Gma11g01520 11 16093474 16097622 Gma12g01736 12 37910679 37918143 PCT