Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01514 ATGGGTTTAATGGAGTGCAATGTGGAGGACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTTAAACCATGTTCTTCTCCTAATTATTCATATCTAAACAATTCCAACACAATATCATCATCATCTTCTTCTCCTTCTTCTTCTTTTTCTTTTACTCATAATCAGTTTGTTCAGGAAACTATCCAATTCTTGCCAATTTTAAGTGAAAAGAAGGCCTCAAAAGATGAGGAAGATCAAACGTTTGATGAGGTGAAAGAGGAAAAGGTTAAACAAGTGACTGTGGCTTTGCACATTGGATTGCCTGACACTAGTAAAGGGCATGCTGATGATGAGGTTGTTGATGAGAAGATGATTTTCCATGTTAAGGAAGAAGAAGAAGAGTCCTCAAAGAGAAGCTTCCATGGATGCTCCTTTAACAACAACCAAGAGAGAAGGTTTTGGATTCCTACTCCTGCACAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATATGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTGAAAGGATCGCAACCAGCTGCAATGTTAAGGTTACCATGCTATTGCTGTGCTCAAGGATGCAAGAACAACATCAACCATCCAAGGGCTAAGCCATTGAAGGACTTCAGAACCCTCCAAACACATTACAAAAGAAAGCATGGCACAAAGCCATTCATGTGTAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAGAGATCACTTAAGGATCATATTAGGTCTTTTGGAAAGGGACATAAACCTCATCCTCCCTTTGAAGCCTTTGAGGATGAGAAGGAATGCATTACTACTGGCTCTGATGAAGATGAAGTTAATGCTCATCATACATGA 993 0.4058 MGLMECNVEDNKNLYLHAPTFIEWLKPCSSPNYSYLNNSNTISSSSSSPSSSFSFTHNQFVQETIQFLPILSEKKASKDEEDQTFDEVKEEKVKQVTVALHIGLPDTSKGHADDEVVDEKMIFHVKEEEEESSKRSFHGCSFNNNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGSQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPPFEAFEDEKECITTGSDEDEVNAHHT 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01514 330 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 327 - -
Gma11g01514 330 PANTHER ZINC FINGER PROTEIN WIP2 1 327 IPR043584 GO:0003700|GO:0010468
Gma11g01514 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 302 IPR013087 -
Gma11g01514 330 SUPERFAMILY beta-beta-alpha zinc fingers 235 269 IPR036236 -
Gma11g01514 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 269 IPR013087 -
Gma11g01514 330 SUPERFAMILY beta-beta-alpha zinc fingers 156 188 IPR036236 -
Gma11g01514 330 Pfam Zinc finger, C2H2 type 165 184 IPR013087 -
Gma11g01514 330 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Gma11g01514 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
Gma11g01514 330 SMART c2h2final6 212 244 IPR013087 -
Gma11g01514 330 SMART c2h2final6 249 269 IPR013087 -
Gma11g01514 330 SMART c2h2final6 165 187 IPR013087 -
Gma11g01514 330 Gene3D Classic Zinc Finger 164 187 - -
Gma11g01514 330 Gene3D Classic Zinc Finger 206 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01514 Gma-Chr11 16037114 16040850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01514 7 318 C2H2 Transcription Factor Family AT1G08290 55.202 1.22e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g01514 zf-C2H2_6 0.00015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01514 - - gmx:100788451 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01514 11 16037114 16040850 Gma11g01514 11 16037114 16040850 ECH
Gma12g00788 12 7309491 7313249 Gma11g01514 11 16037114 16040850 GST
Gma13g02812 13 42671486 42674795 Gma11g01514 11 16037114 16040850 PCT
Gma12g01739 12 37949504 37952867 Gma11g01514 11 16037114 16040850 PCT
Gma11g01514 11 16037114 16040850 Gma13g02812 13 42671486 42674795 PCT
Gma11g01514 11 16037114 16040850 Gma12g01739 12 37949504 37952867 PCT