Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01465 ATGGGCGTGCCTTCGTTCTATAGATGGTTGGTTAACAAATATCCCAAGGTCGTGCAAGACGTGGTGGACCCCACCATGCAAGAAGACCCAAATGGAGTGAAGTTTGGTAACTTGTATCTTGACATGAATGCAATCATCCACCCATGTTTTCACCCCGAAGATGATGACAATATTCCATTTCCTACAACGTTCCAAGATGTGTTCAGGAATGTGTTTGACTACATTGATCGGCTTGTTGAAACTGTTAGGCCTTCGAAGCTCCTTTACATGGCTATTGACGGGGTTGCACCACGTGCCAAAATGAATCAACAACGATCAAGGCGTTTTCGAGCTGCCAAGGACAATGAAATTCAAGAAGCTGAGGAAGAGAGGCTAAGGAGACAATTCGGAATGAAAAGGAAACAAGTTCTTCCTAAACAGCAATCTGATGTGTCAGATTCAAATATCATAACACCTGGCACTGAGTTCATGCATGAACTATCTAAGGCCCTTAAAAGCTACATCTCTTCAAGGATAACCTCTAACTCATTATGGAAGGATATTATGGATGTTGATCTTATAATGCTGGCAATGGCAACTCATGAGCCCCATTTTTCAATATTAAGAGAGAAAGATCCTCATAAAAATTACAGCattgagtttgagcgaattattgatgatttcatcttcatttgctttttcgctggaaatgattttctgccccacatgccaactttggaaatttgtgagGGGGCTATTGATTTGCTAATGACTGTTTACAAGAAAGAATTCAATAAACTTGGAGGATATCTTGTGGACATGAGCATGAGCAGAATTGGGGAGAAAAATGCTGCTTTCTTGAAGTTATCCAGACTTGAAAAATTTATACTTGCTGTTGGTGCATATGAAGAGAAAATCTTTAAGAAAAGATCTGAAATACGAGAAAAATATCTGCGAAGGTTTATTAGAGATAGTGAGGATGCTAAGCAGGACGAAGAGAATGCAACATGTTACTCAGATCTTGATGAAGAAAATACTTCTGATTGTACTCTTCTGATTAAGTCTGTTTTGGTCAACAATGTTTCAGCTACACATGCTGAAATTGAGCAGAACACAAAGGATTTGAAAGACGAATTAAAGATATGTATTAGAGAAAAATGTGACTTGTTTCAGAGCGGGAATTTCCTAACAGACAAGATAAAATTGGGAACAACTGGTTACAAAGAAAGATATTATAAAGCAAAGTTTTCTGTAGAGGGACCTACCGACATTGAGTGCAAAAGAAAAGAAATAGTCCAGAAGTACACGGAAGGTTTGGTGTGGGTTCTTCAATACTATTTTTCATCAGTTGCTTCATGGACATGGTTTTATCCATTCCACTATGGTCCATTTGCTTCTGACTTAAAAGGCATGGGTCAGGTGAGAGTAAAATTTGAAAAAGGTGTCCCATTTTTACCACGTGATCAACTTTTAAGTGAAAATGAGGCCATAAGAAATTCAGTCAAAGCTGATAGCTTGTTTGTTAGAAGTGCTAGCGAATTAGCTGAGAAATTTGGTTCTCTTTCTCTAGACACAAACCCACCATGCAAATTAGAAACAATAAGCAGTGACGGCATTGGGGGTAACATAAGTCTTTGTGACGAGTTCATTGAGAAGCCTTGCTTGGACATTTGCGACAACAAAAAAGAAGACAGTGTCTTATGTGTCTATTACGAGCTTCCGGCTGGTAGTAATCATATTCCTCGTTTACTTTCGGATGTGAAGCTTCCAGAAAAGACAATCTTTGAAATTGACATTATGGAAACAGAACTCTGGCATGAACCTCAGAAATATTATAGTCGTTTTGAGAGGGTGCAAAATCAAGACAAGTGGAGGAGTGAAAACACAAGCAATACTTCAAGGTTTCCCCCCAATGCAAGTAACCAACATGCAAGAAGCTTTGTTTACAAAGATGCTGGTGTTGGATTGGGTTCGGGTAGAGGGAAAAGAATTGATGCAATGGCAAATGAGAGTGTGCCAAACAACATAAGAACACAGCACTTTGTGGACAACTTTAGACAACTCAGAATATCAGAGTCTAATAATCATTTTCCGAGGCCTGGTGGTGGCAGTTCTCAGTCTCGACCGCataatattgGACAAGGTAGGGGTGCATCTAGTAACAGTTCATTGCGGCCTCAATGGAGTGGTGGAAACTCTTACCAAATCTCCGCCAtTCCCTCTTCCGATTCCCCCAAATTCCCGCCCCCAACCCTCCGACCCCCTCCGCCGCCGATCGCCGCCCGGCGCATGTCGGCCTCGCGCGCTCCCCCCGCCGGCGCCGGCGCCTCTAAACCGCCGGACCAGATCATGCACTCCATGAAACGCCAACTCCCGTTCTCCTCTATGAAACCTCCCTTCGTCGCCGCCGGAGACTACCACCGCTTTGCCCCCGACCAACGCCATGACGCCGCCGAAGCCATCGTCGTCAAGACTCCCCAACTGAAGCGGAAGAGTGAAGCGGCTGATTTTGAAGCTGATTCCGGTGATAGGATGACTCCTGGATTCACTGAAGCAGCTAATAGTCCTTTTCAGACACCTGTATCAGGAAAGACGGGGAAGGGAGGCAAATCCTTTAGGCTGACAAAGGGCAACAGACTTGGAACTCAGACCCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGACTTATAGAAAAGAAACTCAAGAACCGAATTCAATGGAAGGGACTGGATGTTTCAAGACCGGGTGAGGCTGATGATAGTTTTCCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGAAGGAGCGCCAGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGAGATCTTAGTGAAGATGAAAATAATGACAAGTTGCTTTTTGTTACTGAGGAGGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTAATAGCTATTAAAGCTCCTCATGGAACCACATTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCGCAGAGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATCTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAAGAGATTAATGGTGTTGATGTTGCACCCAAACTTCCATCCAGTCCAGATGGTACTAAACATCAATCAACAGTGGTCCCGGAGGATAGAGGGAAGGACATAGAAGTGCAGGGACAAGAAGCTCCTGGGCCTAGTTCAGATTTTACTACCTCCCAGGATTTTGTGAGTGGGATCATGAAGATTGTTCCTTCTGATGTTGCTAGTGAAGCTGATTATTGGCTTTTATCAGATGCCGACGTTAGTATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGAACCACTCCAAGAAGATTATTGCATGACTCGCGAGAACACTGCGACCCCAAGTCATCCTTCAAATGTAGATGAAGTGTCTTCTGCACCTAAATCTACTGGAGGTTGA 3651 0.4174 MGVPSFYRWLVNKYPKVVQDVVDPTMQEDPNGVKFGNLYLDMNAIIHPCFHPEDDDNIPFPTTFQDVFRNVFDYIDRLVETVRPSKLLYMAIDGVAPRAKMNQQRSRRFRAAKDNEIQEAEEERLRRQFGMKRKQVLPKQQSDVSDSNIITPGTEFMHELSKALKSYISSRITSNSLWKDIMDVDLIMLAMATHEPHFSILREKDPHKNYSIEFERIIDDFIFICFFAGNDFLPHMPTLEICEGAIDLLMTVYKKEFNKLGGYLVDMSMSRIGEKNAAFLKLSRLEKFILAVGAYEEKIFKKRSEIREKYLRRFIRDSEDAKQDEENATCYSDLDEENTSDCTLLIKSVLVNNVSATHAEIEQNTKDLKDELKICIREKCDLFQSGNFLTDKIKLGTTGYKERYYKAKFSVEGPTDIECKRKEIVQKYTEGLVWVLQYYFSSVASWTWFYPFHYGPFASDLKGMGQVRVKFEKGVPFLPRDQLLSENEAIRNSVKADSLFVRSASELAEKFGSLSLDTNPPCKLETISSDGIGGNISLCDEFIEKPCLDICDNKKEDSVLCVYYELPAGSNHIPRLLSDVKLPEKTIFEIDIMETELWHEPQKYYSRFERVQNQDKWRSENTSNTSRFPPNASNQHARSFVYKDAGVGLGSGRGKRIDAMANESVPNNIRTQHFVDNFRQLRISESNNHFPRPGGGSSQSRPHNIGQGRGASSNSSLRPQWSGGNSYQISAIPSSDSPKFPPPTLRPPPPPIAARRMSASRAPPAGAGASKPPDQIMHSMKRQLPFSSMKPPFVAAGDYHRFAPDQRHDAAEAIVVKTPQLKRKSEAADFEADSGDRMTPGFTEAANSPFQTPVSGKTGKGGKSFRLTKGNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFPSLQAEVENLTMKERQLDEQIREMQERLRDLSEDENNDKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDLYLVSQFEEKFEEINGVDVAPKLPSSPDGTKHQSTVVPEDRGKDIEVQGQEAPGPSSDFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELEPLQEDYCMTRENTATPSHPSNVDEVSSAPKSTGG 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01465 1216 Pfam E2F transcription factor CC-MB domain 978 1078 IPR032198 GO:0046983
Gma11g01465 1216 MobiDBLite consensus disorder prediction 843 893 - -
Gma11g01465 1216 PANTHER OS11G0157000 PROTEIN 1 181 - -
Gma11g01465 1216 PANTHER OS11G0157000 PROTEIN 484 623 - -
Gma11g01465 1216 SUPERFAMILY "Winged helix" DNA-binding domain 897 960 IPR036390 -
Gma11g01465 1216 MobiDBLite consensus disorder prediction 1092 1115 - -
Gma11g01465 1216 MobiDBLite consensus disorder prediction 844 858 - -
Gma11g01465 1216 SUPERFAMILY E2F-DP heterodimerization region 976 1079 IPR037241 -
Gma11g01465 1216 Gene3D - 891 964 IPR036388 -
Gma11g01465 1216 PANTHER 5'->3' EXORIBONUCLEASE 484 623 IPR027073 -
Gma11g01465 1216 MobiDBLite consensus disorder prediction 685 775 - -
Gma11g01465 1216 Pfam Xrn1 helical domain 212 485 IPR041412 -
Gma11g01465 1216 Pfam Xrn1 helical domain 484 592 IPR041412 -
Gma11g01465 1216 Gene3D - 1 122 - -
Gma11g01465 1216 Pfam XRN 5'-3' exonuclease N-terminus 1 181 IPR004859 GO:0003676|GO:0004527
Gma11g01465 1216 MobiDBLite consensus disorder prediction 685 735 - -
Gma11g01465 1216 MobiDBLite consensus disorder prediction 614 637 - -
Gma11g01465 1216 MobiDBLite consensus disorder prediction 869 893 - -
Gma11g01465 1216 CDD E2F_DD 977 1079 IPR032198 GO:0046983
Gma11g01465 1216 Pfam E2F/DP family winged-helix DNA-binding domain 899 962 IPR003316 GO:0005667|GO:0006355
Gma11g01465 1216 PANTHER 5'->3' EXORIBONUCLEASE 182 485 IPR027073 -
Gma11g01465 1216 PANTHER 5'->3' EXORIBONUCLEASE 1 181 IPR027073 -
Gma11g01465 1216 Gene3D - 181 360 - -
Gma11g01465 1216 Gene3D - 970 1079 - -
Gma11g01465 1216 SMART E2F_TDP_2 897 962 IPR003316 GO:0005667|GO:0006355
Gma11g01465 1216 CDD PIN_XRN1-2-like 38 233 - -
Gma11g01465 1216 Coils Coil 978 1012 - -
Gma11g01465 1216 PANTHER OS11G0157000 PROTEIN 182 485 - -
Gma11g01465 1216 Coils Coil 351 378 - -
Gma11g01465 1216 MobiDBLite consensus disorder prediction 736 754 - -
Gma11g01465 1216 MobiDBLite consensus disorder prediction 617 637 - -
Gma11g01465 1216 Coils Coil 913 933 - -
Gma11g01465 1216 MobiDBLite consensus disorder prediction 1192 1216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01465 Gma-Chr11 15390503 15405589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01465 775 1216 E2F-DP Transcription Factor Family AT5G22220 55.789 4.69e-145 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma11g01465 XRN_M 9.9e-96 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01465 K06620 - gmx:100817163 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01465 11 15390503 15405589 Gma11g01465 11 15390503 15405589 ECH
Gma12g00832 12 7770931 7776826 Gma11g01465 11 15390503 15405589 GST