Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01452 ATGGCAGAAGTTGAGATCCCTCAATATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACCACTGTGACAGGCATAACATATGATAGAGAAAGCATAGAGAAGTGGTTGCTTAAGGCCAAAGATTGTGTGTGTCCTGTTTCCAAACAACCCTTGCCGAGAAGCTCTCAATACTTAACACCTAACCACACTCTTCGGAGGTTGATTCAAGCTTGGTGTTCAGCAAACACTTCCAACGGTGTTGATCGAATTCCGACCCCGAAAACGCCTTTGAGCATGGTCCAAGTTCAGAAGCTTCTCAAGGGTCTTGAGGTTCCTTGTTCTTATCAAAAATCATTGGAGAAGTTGCATGGCTTGGCTACAACTGAGAGGAACAGAATCTGCATGGCTGAGGCTGGTGTGGCTAAGGCCATGATCAAATTGATTAACAAGAGTTTCAAAGAAGGAAACACAAATTTAAACAACACCACTTGCATAGAAAAGGTTTTGAGAATTGTTCATGTTCTTTGGAGCAATGATCAAAGTAGCATGAAAAGTACTCTAGTTGGGGAGAACAACTTGGACTTCATCAACTCCTTGACTTGGATTTTGAAGGTTCATTTGGATGACAACAACATCAAGATGGTGAACGAAGCAATGCCCCTTTTGAAGTTGACAATTGAAGTTGCTGCTGACTCAACCCTTTTGGGGAGTTTAGGCCTTGAATTCTTCAAGGAAATTGTGAGAGTTTTGAGAAAGAGAGCACTACTCTCTCAACAAGCCATTAAATCAGCTTTGTGTGTGCTTACAGAAACTAGCATTTCAGGTAGAAACAGAACAAGGATTGTTGAAGCAGGTGCAGTCACAGAACTCATAGAGCTTGAGCTAGAGAAGCCAGAGAAGAACATGACAGAACTCATATTCAACCTTCTGGCACTCCTGTGTTCTTGTGCTGATGGAAGAGAACAGTTTCTGCGACACGCCGCGGCCATTGCAGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGACAGAGCAATTCATGTGTTTTCAGTTATAGCCAAGTTTTCAGCATCAAATGAGGTTGTTCTAGAGATGTTGAGGGTTGGAGCTGTGTCAAAGCTTTGCATGCTTATGCAAGCTGATTGTGCTTCATATTTGAAAGAGAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCTTGCATACAATTGTATTTGTTCACTAGGCACCAAAGGTGA 1254 0.4258 MAEVEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEKWLLKAKDCVCPVSKQPLPRSSQYLTPNHTLRRLIQAWCSANTSNGVDRIPTPKTPLSMVQVQKLLKGLEVPCSYQKSLEKLHGLATTERNRICMAEAGVAKAMIKLINKSFKEGNTNLNNTTCIEKVLRIVHVLWSNDQSSMKSTLVGENNLDFINSLTWILKVHLDDNNIKMVNEAMPLLKLTIEVAADSTLLGSLGLEFFKEIVRVLRKRALLSQQAIKSALCVLTETSISGRNRTRIVEAGAVTELIELELEKPEKNMTELIFNLLALLCSCADGREQFLRHAAAIAVVSKRVLRVSAATDDRAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMLMQADCASYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01452 417 PANTHER WDSAM1 PROTEIN 3 414 IPR045185 GO:0061630
Gma11g01452 417 Gene3D - 109 406 IPR011989 -
Gma11g01452 417 SUPERFAMILY RING/U-box 3 82 - -
Gma11g01452 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Gma11g01452 417 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Gma11g01452 417 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Gma11g01452 417 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Gma11g01452 417 SUPERFAMILY ARM repeat 206 394 IPR016024 -
Gma11g01452 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01452 Gma-Chr11 15115263 15116894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01452 3 414 U-box Gene Family AT3G11840 40.618 1.12e-98 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01452 - - gmx:100811293 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00845 12 8051933 8053147 Gma11g01452 11 15115263 15116894 GST
Gma13g02773 13 42287648 42289201 Gma11g01452 11 15115263 15116894 PCT
Gma12g01785 12 38478004 38479601 Gma11g01452 11 15115263 15116894 PCT
Gma11g01452 11 15115263 15116894 Gma13g02773 13 42287648 42289201 PCT
Gma11g01452 11 15115263 15116894 Gma12g01785 12 38478004 38479601 PCT