Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01450 ATGGCGGACTCCGACAATGACTCCGACGGCGCGCACAACAGCGGCAAGGGGGTCAAGTTGTTGTCGCGGGAGCAGGACCGGTTTCTCCCAATCGCGAACGTGAGCCGCATCATGAAGAAGACGCTGCCGGAAAACGTGAAGATCTCGAAGTACATGAAGGAGACGGTGCAGGAGTACGTGTCAGCGCTCATCAGCTTCATCATCGACAAGGCCTCCAACAAGTGCCAGCACGAGAAGCGCAAGACGATCAACGACGACGACCTACTCTGGGCGATGACCACTCTGGGCTTCGAGGACTACTTGGAACCTCTCAAAGGCTACCTCTAG 327 0.5688 MADSDNDSDGAHNSGKGVKLLSREQDRFLPIANVSRIMKKTLPENVKISKYMKETVQEYVSALISFIIDKASNKCQHEKRKTINDDDLLWAMTTLGFEDYLEPLKGYL 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01450 108 PRINTS CCAAT-binding transcription factor subunit A signature 94 108 - -
Gma11g01450 108 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Gma11g01450 108 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Gma11g01450 108 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 108 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gma11g01450 108 Gene3D Histone, subunit A 19 108 IPR009072 GO:0046982
Gma11g01450 108 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 108 - -
Gma11g01450 108 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Gma11g01450 108 SUPERFAMILY Histone-fold 25 108 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01450 Gma-Chr11 15062621 15062947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01450 1 108 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.074 1.03e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma11g01450 CBFD_NFYB_HMF 4.3e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01450 K08065 - gmx:102670152 208.379