Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01427 ATGCCGGGGTTAACGTGCAACGCTTGTAACACCGAATTCAAAGATGACACAGAGCAAAAGCTCCATTACAAATCCGAGTGGCATCGATACAATCTCAAGCGCAAGGTGGCTGGGGTTCCTGGGGTGACTGAAGCTCTATTTCTGGCTAGACAATCTGTGCTTGCTCAAGAGAAAAATAAACTGGGTGAAACTCCCATGCTCTACTGCTGTGGTCTTTGTGGAAAGGATTATAAAAGTTCCAAGGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATGCGGGCCTCTGAAGGAACTAGTCAAGCAGATGAGAAGGCAATAGTTAAGCCACTTCCACAACGTGTTGTGAATAGGCCTCCTCCTAGAAGAGAGGTTGATAACTCTGAAAATGAGGAAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAAGAGGATTTGGTTGACGGTGCTGCAAAGTCCTTGACTGATTTGAATGTGAATGAGCATGGTGAAAATGTTGATATGGAGGAAGATGATGATTTTGAGGAGTTAGACCCCTCTTGTTGCTTTATGTGTGATCAAGAGCACAAAACAATAGAAGACTGCATGGTTCACATGCACAAGCATCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACCTATCTTGGCCTTAAGGTCAAAAGGGACTACATGTGTCTGTACTGCAATGATCGATGTTATCCATTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGAGGCAAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGATGATGACGAGGAGGTAGAATTAGATGAATTCTATGATTATAGCAGCAGTTATGTGGATGATCAAGGCAAGCAGCTTGTTGCATCTTGTGATGCATCTAACAATGTAGAACTTGCTGGTGGGTCCGAGCTCATAATCACCACGAAATCTGGTGATAGATCATCAACCAAAACACTTGGTTCCCGTGAATTTTTGCGTTATTATCGTCAGAAACCTCGGCCATCACTAGCAAATATGGCTATCACTGCTGCATTGGCTTCAAGGTACAGGAGCCTGGGCTTGACCACTATCCAATCAAGGGAGAAGATTGTGAGGATGAAAGTGCTGAAGGAAATGAATAGGTCAGGTGTGGACAATATGCGTACCAAGATGGCGATGAAGAGTAATGTCATCAGGAACCTGCCAAATAATGTACCATATTAG 1224 0.4387 MPGLTCNACNTEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVLAQEKNKLGETPMLYCCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSQADEKAIVKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEEDLVDGAAKSLTDLNVNEHGENVDMEEDDDFEELDPSCCFMCDQEHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDDEEVELDEFYDYSSSYVDDQGKQLVASCDASNNVELAGGSELIITTKSGDRSSTKTLGSREFLRYYRQKPRPSLANMAITAALASRYRSLGLTTIQSREKIVRMKVLKEMNRSGVDNMRTKMAMKSNVIRNLPNNVPY 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01427 407 PANTHER ZINC FINGER PROTEIN 622 1 407 IPR040025 -
Gma11g01427 407 SUPERFAMILY beta-beta-alpha zinc fingers 172 268 IPR036236 -
Gma11g01427 407 MobiDBLite consensus disorder prediction 130 145 - -
Gma11g01427 407 Pfam C2H2 type zinc-finger (2 copies) 183 284 IPR041661 -
Gma11g01427 407 ProSitePatterns Zinc finger C2H2 type domain signature. 69 92 IPR013087 -
Gma11g01427 407 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Gma11g01427 407 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Gma11g01427 407 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Gma11g01427 407 MobiDBLite consensus disorder prediction 84 145 - -
Gma11g01427 407 PANTHER ZINC FINGER PROTEIN-RELATED 1 407 - -
Gma11g01427 407 SMART c2h2final6 232 259 IPR013087 -
Gma11g01427 407 SMART c2h2final6 4 28 IPR013087 -
Gma11g01427 407 SMART c2h2final6 181 203 IPR013087 -
Gma11g01427 407 SMART c2h2final6 68 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01427 Gma-Chr11 14734945 14737998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01427 1 407 C2H2 Transcription Factor Family AT4G31420 66.667 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01427 K14816 - gmx:100809681 770.77