Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01417 ATGGCTAGAAATAAGGTTCACCATACCTACATAAACAATCCCCTGAAGGGGAATGCAGCATTCAAGAAAAGGGAAAATGGTTTTCTCAAAAAGGTTTATGAAATCACTACCCTTTGTGGCATTCAAGCATGTGCTATCATTTATACTCTAGATGAACCCGAGCCTGAGGTTTGGCCATCTAACAAGGGAATGGAAA 196 0.4031 MARNKVHHTYINNPLKGNAAFKKRENGFLKKVYEITTLCGIQACAIIYTLDEPEPEVWPSNKGME 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01417 65 Gene3D - 17 64 IPR036879 GO:0003677|GO:0046983
Gma11g01417 65 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma11g01417 65 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma11g01417 65 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gma11g01417 65 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma11g01417 65 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 64 - -
Gma11g01417 65 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Gma11g01417 65 PANTHER MADS BOX PROTEIN 3 64 - -
Gma11g01417 65 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01417 Gma-Chr11 14570349 14570688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01417 1 60 Type I MADS-box Gene Family AT1G22590 48.333 2.16e-17 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma11g01417 SRF-TF 9.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01417 - - gmx:102667813 108.227