Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma11g01416 | ATGGCTAGAAAGAAGCTTCGCCATACATACATAAACAACCCCCTAAAGAGGAAAACAACGTTCAAGAAAAGAAAAAATGGTTTTCTCAAGAAGGTTGATGAAATCACTACCCTTTCTGACATTCGAGCATGTGCTATCATTTATACTCTGGATGAACCTGAGCCTAAGGTTTGGCCATCTAACCAGGGACTAGAAAGTGTGATTTCCAGGTTTAGGGGAGTTTCTGAATTGGCACAAAGCAAGAGAATGTTGTGTCAAGAGAACCTTTTGAAAAGAAACATAATGAAAGCTCAGGGAAAATTGATGAATGAAATCAAGAAGAAGGAGATTGGCCTTTTCATGTGTCAATACTTTGCTAGTTGGAACAACCTTGACAATGCAAACATTATTGATCAGAATGATATCACATTGTTGGCTAATAAAAAATTGGAGATTACAAAGAAAAATGAAATTCTCCAAGTCCAAGAGGTGACACCAGCTATTGAAAATGGAGGAGAAACCATGACTGAAGGAGAGCAAACACTTGTGGCCAATGTGGATGCCATGCCAAATCTGAATTGGTCTAATGACAACATCGATGATGGTGATGGGGATGGGATCGATGTGAAGATTGGAAGATGTTAA | 624 | 0.3878 | MARKKLRHTYINNPLKRKTTFKKRKNGFLKKVDEITTLSDIRACAIIYTLDEPEPKVWPSNQGLESVISRFRGVSELAQSKRMLCQENLLKRNIMKAQGKLMNEIKKKEIGLFMCQYFASWNNLDNANIIDQNDITLLANKKLEITKKNEILQVQEVTPAIENGGETMTEGEQTLVANVDAMPNLNWSNDNIDDGDGDGIDVKIGRC | 207 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma11g01416 | 207 | SUPERFAMILY | SRF-like | 1 | 81 | IPR036879 | GO:0003677|GO:0046983 | |
Gma11g01416 | 207 | PANTHER | MADS BOX PROTEIN | 2 | 157 | - | - | |
Gma11g01416 | 207 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Gma11g01416 | 207 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Gma11g01416 | 207 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
Gma11g01416 | 207 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Gma11g01416 | 207 | Gene3D | - | 15 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Gma11g01416 | 207 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN | 2 | 157 | - | - | |
Gma11g01416 | 207 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma11g01416 | Gma-Chr11 | 14491351 | 14492118 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma11g01416 | 1 | 185 | Type I MADS-box Gene Family | AT5G48670 | 38.542 | 2.40e-26 | 101 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Gma11g01416 | SRF-TF | 1.2e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma11g01416 | - | - | gmx:102667813 | 394.045 |