Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01392 ATGGAGTTCGGAGGGAACATGTTCCGCCTCGGCAACAGAGACCAAAATGGAAACACTAACAACAACGGTAACGCTTTCGCTTGGGATTCATGGGAAAACCCCACTAATAGTAATAATAATAATAATAACAATAATAACAGTTCTAGACTGGTCAACGCTTTTCACATCCCCGTCGCCTCTGGGATTCCGTCGATGGATGATGGATCCGTCCACGTGATCCTTCATGAGACGGCAGGACTGGCCAGCGCCGTCATGTTTCTTCCTCAAAACGGCGGGGTTTTGGGTCACCGCCAGCAGCAGCATCCGTACGGCGGGGATGGGTCCCACGTGCACCCGGACCCGCACCTCATGTCCTTGAAGCTAGGGAAGAGGCATTACTTTGAGGACACTAGTGGGAGTGGAAGTGTTGTTGGTGCTGCTACTTTTGGTGGAGGGTTGGTGTTCGGGGATAAGAGAGGGAAAGGGTACTCCTCCGGCGGTGGTGCGGGGGTGAAGGCGGCGGGGTTTGCGGCGGCGACGGTGCCGAGGTGTCAGGTGGAAGGGTGCCACGTGGCACTGCTCAACGCGAAGGACTACCATCGGAGGCACAAGGTGTGTGAGATGCACTCTAAAGCTCCTAAAGTCGTGGTCTTAGGCATGGAACAAAGGTTTTGCCAACAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGGAGACTAGCAGGTCACAACGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATTCTTCACAAGCAGGAGGGTGTGCTCTCTCTCTTCTGTCATCAAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTCTCCACAAGATGCAGTGCCGCGTTGCGCGAATTGATAGCCGAAAACCGGGCAGCCATCATGGCAAGGCAATTTGTTTCAGATAGATCACATTTGCATAGTCACCACCATGCAGTGGAAGACTTGAAGGACATCCAACCTGAGTCCAATTACTTCCCACAACAAATGTATCCCCAGACACAGTGA 1035 0.5179 MEFGGNMFRLGNRDQNGNTNNNGNAFAWDSWENPTNSNNNNNNNNNSSRLVNAFHIPVASGIPSMDDGSVHVILHETAGLASAVMFLPQNGGVLGHRQQQHPYGGDGSHVHPDPHLMSLKLGKRHYFEDTSGSGSVVGAATFGGGLVFGDKRGKGYSSGGGAGVKAAGFAAATVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQAGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRSHLHSHHHAVEDLKDIQPESNYFPQQMYPQTQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01392 344 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
Gma11g01392 344 MobiDBLite consensus disorder prediction 1 46 - -
Gma11g01392 344 Pfam SBP domain 177 250 IPR004333 GO:0003677
Gma11g01392 344 SUPERFAMILY SBT domain 175 256 IPR036893 GO:0003677|GO:0005634
Gma11g01392 344 MobiDBLite consensus disorder prediction 11 46 - -
Gma11g01392 344 MobiDBLite consensus disorder prediction 323 344 - -
Gma11g01392 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 64 344 - -
Gma11g01392 344 Gene3D - 169 238 IPR036893 GO:0003677|GO:0005634
Gma11g01392 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 344 IPR044817 GO:0003677
Gma11g01392 344 MobiDBLite consensus disorder prediction 241 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01392 Gma-Chr11 12656288 12663951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01392 117 250 SBP-box Gene Family AT1G27370 51.449 2.57e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma11g01392 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01392 - - gmx:100786328 618.616