Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01372 ATGGGTCGAGGGAAAATCGAGATCAAAAGAATCGACAATGCTAGCAGCAGACAAGTCACGTTCTCGAAGCGGAGAACAGGGTTGTTCAAGAAGGCTCAGGAACTTTCCATTCTCTGTGACGCCGAGGTTGCTGTCATAGTTTTCTCCAACACTGGCAAGCTCTTCGAGTTTTCCAGTTCCGGTATGAAGCGAACACTTTCAAGATACAACAAATGCCTTGGTTCTACAGATGCTGCTGTAGCAGAAATTATGACACAGAAGGAAGATTCTAAGATGGTGGAGATTCTAAGAGAGGAAATTGAAAAGCTAGAAACAAAGCAATTACAGTTGGTGGGTAAGGATCTGACAGGATTGGGTTTAAAGGAATTGCAAAATTTAGAGCAGCAACTTAATGAGGGGTTATTGTCTGTCAAGGCGAGAAAGGTCTCACTTATCCCTCTTCCCCTTCACTACGTTCCTTTTTTTTCCTTTTCATTGAGGATTGAGGAGCTTCGGTGTCTGTTTCCACAATCAGAAAGCATGGTCCCATTCCAATACCAACATACTGAAAGAAAGAATACTTTTGTAAATACTGGCGCCAGATGTCTCAACTTGGCTAATAACTGTGGAAATGAGAAAGGGAGTTCAGATACAGCATTTCATTTGGG 647 0.425 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSSSGMKRTLSRYNKCLGSTDAAVAEIMTQKEDSKMVEILREEIEKLETKQLQLVGKDLTGLGLKELQNLEQQLNEGLLSVKARKVSLIPLPLHYVPFFSFSLRIEELRCLFPQSESMVPFQYQHTERKNTFVNTGARCLNLANNCGNEKGSSDTAFHL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01372 215 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gma11g01372 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma11g01372 215 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gma11g01372 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma11g01372 215 ProSiteProfiles K-box domain profile. 86 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma11g01372 215 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gma11g01372 215 Coils Coil 86 113 - -
Gma11g01372 215 PANTHER MADS BOX PROTEIN 1 215 - -
Gma11g01372 215 Coils Coil 120 140 - -
Gma11g01372 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma11g01372 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma11g01372 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma11g01372 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma11g01372 215 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 215 - -
Gma11g01372 215 Pfam K-box region 87 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma11g01372 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01372 Gma-Chr11 12026569 12032310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01372 1 215 MADS-box Gene Family AT5G13790 48.673 1.39e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma11g01372 K-box 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01372 - - gmx:547732 353.984