Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01359 ATGATGTCTGAAGAAACCTTTTCTGTTCCTCCTCCCAACTCCACCATCAGAGCCACCTCCTTGGTTCATCATCATGCTCATGTTCAACCCCCAAGCCCAAGCCCAAACCCTAATCCTAACCCTAATTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTGGCTCTTTCGCCAAAGTCCCTCATGGCTACCAACCGTTTCTTATGTGAAATTTGCAACAAGGGTTTTCAGAGGGACCAGAATTTGCAACTGCATAGACGAGGACACAACCTTCCATGGAAGCTGAAACAGAGAGCGAACAAAGATCAAGTGAGGAAGAAGGTGTACGTGTGCCCTGAGAAGAGTTGCGTGCACCATGACCCCTCAAGAGCCTTGGGGGACTTGACAGGGATAAAGAAGCACTATAGCCGAAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCTTTTTGTGACGCTTTGGCTGAAGAAAGTGCGAGGGTAACAACAGTTCCAGCAGCTTTAAGCAACTTGAGAAACGATCATCATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTAATTTTTCCGGGTTCCACTCATCAGATCAATTATTCGGTGGTGGATCATCAGAAGCATTATTGGCGAATCATCATCATCATCATCAACAACAAAAGCTAAGGCTACCACTATGGCTGGATCATCACCAAGTCAATAATAATCCTCAAGTACTTCACTACCACACTCTTAACAACTTCTCAACAAAACCAAATGGTTTCACTACTAATTCAGGTTCAGGACCAAACTCTGTGACTGATCTAGTTCAAACAATGGACATGTTTGGGTCACAGACAGAGTTTGTGAATTACCGTTACCCAGAAGCATCATTTGGAGGTGGCAATGCCAACGTGTCTGTGCTACCGCCACATGAACTGAAGCAAGAACAAGAAGAAAACAAAGAACACTTGTCGCATAGCGGAGCCTCTTATAATAACTTGTACTTGAGTAGTAGTGATATTCAGAACCCACCACCTCATCATCATCACTACATGTCAGCCACCACACTGTTGCACAAAGCGGTTCAAATGGGATCTTCAAGGTTGATGAACGACAACGTATTTGGCTCCATCTTGGGCACCACCACCACCAACAGCAACAACAACAACGTTGTTGTTGAGGTTCAGAAGCTGAACGAGTTGGTGAGTGTGGAAGCTGCTGGGTGCACCAACAACAACCTTGGAGGTGGGTATTTATTAAACGACTCAAACAATAGTAACTCGTTTGTGGTTGTGAATGGCACCAACAAGGGTGGTGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACACAACAAGCATCAATTATGGGAAAGCAATTACACTCATCACTAAGCTCAAATAACAAGAATCAACAACTTGGTTTAACAAGAGATTTCTTGGGTGTTGGAGATCATAATAATAGTATTGACTCTATAAGAAGACCTTTTCTTCAACAAGACCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCTCAGCATCAGTCATGAACCTGCAGAGCCAGTACGGTGGACACTACTGCTAG 1728 0.4485 MMSEETFSVPPPNSTIRATSLVHHHAHVQPPSPSPNPNPNPNSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTTVPAALSNLRNDHHHHLTNAQASRIPQINFSGFHSSDQLFGGGSSEALLANHHHHHQQQKLRLPLWLDHHQVNNNPQVLHYHTLNNFSTKPNGFTTNSGSGPNSVTDLVQTMDMFGSQTEFVNYRYPEASFGGGNANVSVLPPHELKQEQEENKEHLSHSGASYNNLYLSSSDIQNPPPHHHHYMSATTLLHKAVQMGSSRLMNDNVFGSILGTTTTNSNNNNVVVEVQKLNELVSVEAAGCTNNNLGGGYLLNDSNNSNSFVVVNGTNKGGGLEHMVMPVDEETQQASIMGKQLHSSLSSNNKNQQLGLTRDFLGVGDHNNSIDSIRRPFLQQDLVEFNAMGSASASASVMNLQSQYGGHYC 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01359 575 MobiDBLite consensus disorder prediction 1 20 - -
Gma11g01359 575 Gene3D Classic Zinc Finger 55 128 - -
Gma11g01359 575 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Gma11g01359 575 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 36 533 - -
Gma11g01359 575 SUPERFAMILY beta-beta-alpha zinc fingers 75 173 IPR036236 -
Gma11g01359 575 SMART c2h2final6 76 98 IPR013087 -
Gma11g01359 575 SMART c2h2final6 153 173 IPR013087 -
Gma11g01359 575 SMART c2h2final6 118 148 IPR013087 -
Gma11g01359 575 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Gma11g01359 575 MobiDBLite consensus disorder prediction 1 60 - -
Gma11g01359 575 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 533 - -
Gma11g01359 575 Gene3D Classic Zinc Finger 129 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01359 Gma-Chr11 11839451 11841738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01359 46 223 IDZ Gene Family AT3G45260 84.831 2.89e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g01359 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01359 K25870 - gmx:100817691 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01359 11 11839451 11841738 Gma11g01359 11 11839451 11841738 ECH
Gma12g00625 12 5210681 5213421 Gma11g01359 11 11839451 11841738 GST
Gma13g02917 13 43734906 43737745 Gma11g01359 11 11839451 11841738 PCT
Gma12g01619 12 36214065 36216411 Gma11g01359 11 11839451 11841738 PCT
Gma11g01359 11 11839451 11841738 Gma13g02917 13 43734906 43737745 PCT
Gma11g01359 11 11839451 11841738 Gma12g01619 12 36214065 36216411 PCT