Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01354 ATGGAAATTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCTGTGATAGGGAATGTGAGAAAGGTGTTGGTGTTACTTGTTGGTCCTCTTCCACTTGTTCATCCTCTACTTCTTCCTCTTCAGCGCTTGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAAGTTGCATCTTTCTCTCCTTTCACACCATTGGAGATTCCCACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAACTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAAGCTGAGTTGGAAGGGATGTATTTAGAGGGTAAAGAACTTGAGGAATTGGGAGCAGAAGAGGAGGGGGATGATAGATCACCAACTAAATCAACCCCTCACATGTTCTGCAAAACACTAACTGCCTCTGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGCCGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCATCACAAGAGCTTGTTGCCAAAGACCTGCATGATGTGGAGTGGAAATTTCGTCACATTTACAGAGGTAATccaaggcggcatctactcactactggatggagcatttttgtcagtcaaaagaatcttgtctccggtgatgcagtgctcttcctaagGGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGATCTTCCTGAATCAGTTATTGGAAGCCAGAACTGCTATCCCAATGTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCAAGCAGACTTTGTTGTTCCCTACCAAAAGTATGTTAAAAGCATCAAGAATCCAGTGAGCATTGGAACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCAAGAGAGGAGgtgttgtagtgggatgttgattggaacgagtgatttggatccttatagatggcccaaatcaaaatggaggtgcttgatgGTCAGATGGGATGAGGATATTGAGACTAATCATAAAGACAGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAGCTGCGGACAGGTCTGCAGGTTGCCTCACCTAGTCACCTCATCACTGCAGCACGAGGCAGAGGATTGATAGACTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGGGTCACTCTACTACGGATGTGACACAGTAACCAAGCCACCAGGTTTTGAGATGAGCTCTCAAAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGATTACCTCTTCTGAGCTGAGTAGTGTGCACCCTTTCAGTTATGCAGGCTTTGTGGAAACCAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGGTTGATATGAACCTTGGTGCTTGGGGAATGCCCAATCTTAGTTGCACAACTTTCAACCTCCACCAGGCAACCAAACCAAGCTTTCAACTTTCATTGTTTCCTTACGGGGATATTCACCAAGCCAGTCAAGCTAGCTTGTTTTGCTCGAAATCCACCACTTTCCAGAGAGAGAATGTCCCATTTAACAAGCCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGAAGATCAGATCTCCCAAATGACCATAAGCTGCAGGGCAATAATATTTCTGCTGCTGGGAATATGGGGGTTTCTATTGACAACAATGTCCAGGGAAAGGTAAATGCCTGCAAACTATTCGGGTTTTCTTTGTCTGGGGAAACTACTACCCAAAATTTGCAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGTGGCTACAATGATCTGCTGAGTGAACTAGAGAGACTGTTTAGCATGGAAGGCCTTCTAAAAGATCCTGATAAGGGATGGAAGATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGACCCATGGCATGAGTTTTGCGATGTGGTGTCCAAGATCCATATATACACCCAAGAAGAAGTGGAAAAGATGACAATTGAGATGATCAGTGATGATACTCATAGCTGTTTGGAAGAGGCACCAGTGATTATGGAGGCTTCAAAGTCTTCCTCAGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGGGTCTAA 2379 0.4128 MEIDLNHEVTEVEKNAFCDRECEKGVGVTCWSSSTCSSSTSSSSALVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPLEIPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMYLEGKELEELGAEEEGDDRSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHDVEWKFRHIYRGNPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAISTKSKFHVFYSPRASQADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCCSGMLIGTSDLDPYRWPKSKWRCLMVRWDEDIETNHKDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHLITAARGRGLIDFEESVRSPKVLQGQENAGFGSLYYGCDTVTKPPGFEMSSQSHPNLGSAEVRKITSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKVDMNLGAWGMPNLSCTTFNLHQATKPSFQLSLFPYGDIHQASQASLFCSKSTTFQRENVPFNKPSTQAGIIVNEVGRSDLPNDHKLQGNNISAAGNMGVSIDNNVQGKVNACKLFGFSLSGETTTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFSMEGLLKDPDKGWKILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIEMISDDTHSCLEEAPVIMEASKSSSVGQPDYSPTAVRV 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01354 792 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 780 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma11g01354 792 Gene3D - 163 267 IPR015300 -
Gma11g01354 792 Gene3D - 328 399 - -
Gma11g01354 792 CDD B3_DNA 163 265 IPR003340 GO:0003677
Gma11g01354 792 SUPERFAMILY CAD & PB1 domains 667 743 - -
Gma11g01354 792 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma11g01354 792 Gene3D - 660 753 - -
Gma11g01354 792 SUPERFAMILY DNA-binding pseudobarrel domain 157 276 IPR015300 -
Gma11g01354 792 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Gma11g01354 792 PANTHER AUXIN RESPONSE FACTOR 9 780 - -
Gma11g01354 792 SMART B3_2 165 267 IPR003340 GO:0003677
Gma11g01354 792 ProSiteProfiles PB1 domain profile. 664 748 IPR000270 GO:0005515
Gma11g01354 792 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01354 Gma-Chr11 11764968 11771172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01354 47 792 B3 DNA Binding Superfamily AT5G60450 61.346 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma11g01354 B3 7.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01354 - - gmx:100816621 1541.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01354 11 11764968 11771172 Gma11g01354 11 11764968 11771172 ECH
Gma12g00630 12 5270323 5277237 Gma11g01354 11 11764968 11771172 GST
Gma13g02923 13 43789998 43795584 Gma11g01354 11 11764968 11771172 PCT
Gma12g01613 12 36077843 36084183 Gma11g01354 11 11764968 11771172 PCT
Gma11g01354 11 11764968 11771172 Gma13g02923 13 43789998 43795584 PCT
Gma11g01354 11 11764968 11771172 Gma12g01613 12 36077843 36084183 PCT