Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01351 ATGGAAAAGTTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCCGTTCTCTCAGATGAACAAGTTTCAAAAATGTGGGCTAAGAAGAATGCTGGTGGAAAAGAACAGGTGGCAAAATTAGTGGATGATACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAAGTGAATTTGATGATGCTTTTCAACGAGATGTAAAGATTCGCTGTCTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGTGTTATTATTCCCGAGAAACCTACCGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTCTGTCGTCTCACTCGTGCAGACCCATTTTGGGTTTCAGTGGCACACCCTTTGCATCCTGTGAAGTTGACCACAACCAGTAATCCAACTGATGGAAACAACCCAGTGCAGAGTGTGGAGAGAACATTTCAACTGACTAGAGCTGACATGGACTTAGTATCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGTGCAACTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGGGATGACGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGGATGCGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGCATGCAGCAGATCCTAAACTCAATCCCAAAGGAGTCTGATGGAGAGAAATTTGAAGAAGCTCTTGCACGTGTCTGCCGTTGTGTTGGGGGAGGAAATGCAGCTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACTATCAACCTTCGATGTCCTATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTTAAACCCTGTATTCACATGGGTTGCTTTGATCTTGAAGTTTTTGTGGAAATGAATCAGCGATCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATGAACTGTGGCGAAGAAATTGCAGAGATTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGTAAAGAGTGAAAGTGAACGCCTGGAATTAGGAAATCTAGCACAGTGGCGCCTTCCTGATGGAACCCTTTGTGTTTCAACTGATGTTGATGTTAAGAGAGTGGATACATTGAAGCAGGTTAAACAGGAAGGTGTTTCAGACAGTCCTGCTGGTTTAAAACTTGGCATAAAGAAGAATTGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTAATAATTTGAAAAGGGTTTTTGGAAATCCCGAACAGGTTGTTATTCCAATGAGCAGCAGTGCCACTGGAAGTGGTCGGGATGGTGACGATCCTAGTGTAAATCAGGGTGGTGGTGGGCATATTGACTATTCCACTACAAATGGGATTGAGATGGATTCTTTGTGTCTCAATAATGTTGATTTAGCATATGAATATACTGCACCCAACACTTCTGCCCAGGTGGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATCTGTTGGCATCTCCTGCAATTGCATATAAGAACAACAGAAATGATGCTACAGATGGTTACTCTGTACCACCACCTGTAATTGTTGATTCATATACTGAAGATCATAATCTTGGTGGAAATTCATGCTTGGGACTCTTTCCTAATGATGATGATTTTGGGATGTCTTCCCTATGGCCATTGCCTTCTGGAAGTCAAGCTGGTCCTGGCTTCCAGTTATTTGGTTCTGATGCAGATGTGTCTGACGCATTGGTCCATCTGCAGCATGGTCCTATGAATTGCTCCTCGTCACTAAATGGTTATGCATTGGCCCCAGATACTGCTTTGGGATCTGGCGGTATCTTGCAAGAGTCCTCTGCTGGTCGCTCAGTTGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTGGCATTTGGTGGAGATGATCCCTCATTTCAGATTTTTCTCCCCACAAGACCAGCAGATTCATCCATGCACAATGAATTGAGAGATCAAGCAAATGTGGCTAATGGTGTCTGCACTGAGGAGGATTGGATATCCCTTAGACTTGGAGGTGGTGCTGGTGGTAACAATGGTGATGCTCCCACTCAAAATGGGTTGAATTCTAGACATCAAATCCCAACCAGAGAAGGCGCCAAGAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTAGATCTGACAGGGCAAGAAGGCAAAGATCAGATAGCCCTTTCTCCTTTCCTCGGCAAAAGCGTTCAAGCTACAAATTACCCTGTGCCAAAATGCTTTCACCTACCCCATTGGCAAAGATGTTGGCCCTAATGATTCTTTGCTCTTGA 2655 0.432 MEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAGGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKSEFDDAFQRDVKIRCLCGSRLETEDLVKCDDPRCHVWQHISCVIIPEKPTEGIPPVPDKFYCELCRLTRADPFWVSVAHPLHPVKLTTTSNPTDGNNPVQSVERTFQLTRADMDLVSKPEFDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVKRRSMQQILNSIPKESDGEKFEEALARVCRCVGGGNAADDADSDSDLEVVSDTFTINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMMNCGEEIAEIEVKPDGSWRVKVKSESERLELGNLAQWRLPDGTLCVSTDVDVKRVDTLKQVKQEGVSDSPAGLKLGIKKNCNGVWEVSKPEGTNTSSGNNLKRVFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTTNGIEMDSLCLNNVDLAYEYTAPNTSAQVGGAEVIVLSDSEEDNDLLASPAIAYKNNRNDATDGYSVPPPVIVDSYTEDHNLGGNSCLGLFPNDDDFGMSSLWPLPSGSQAGPGFQLFGSDADVSDALVHLQHGPMNCSSSLNGYALAPDTALGSGGILQESSAGRSVADLNGGLVDNPLAFGGDDPSFQIFLPTRPADSSMHNELRDQANVANGVCTEEDWISLRLGGGAGGNNGDAPTQNGLNSRHQIPTREGAKNTLDDTASLLLGMNDVRSDRARRQRSDSPFSFPRQKRSSYKLPCAKMLSPTPLAKMLALMILCS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01351 884 Pfam PHD-finger 107 159 IPR019787 -
Gma11g01351 884 SUPERFAMILY SAP domain 2 52 IPR036361 -
Gma11g01351 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 440 IPR013083 -
Gma11g01351 884 ProSiteProfiles SAP motif profile. 4 38 IPR003034 -
Gma11g01351 884 CDD PHD_Bye1p_SIZ1_like 107 158 - -
Gma11g01351 884 MobiDBLite consensus disorder prediction 836 850 - -
Gma11g01351 884 SMART PHD_3 107 159 IPR001965 -
Gma11g01351 884 MobiDBLite consensus disorder prediction 534 558 - -
Gma11g01351 884 Pfam MIZ/SP-RING zinc finger 352 400 IPR004181 GO:0008270
Gma11g01351 884 ProSitePatterns Zinc finger PHD-type signature. 108 158 IPR019786 -
Gma11g01351 884 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 4 803 - -
Gma11g01351 884 Gene3D SAP domain 1 51 IPR036361 -
Gma11g01351 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 164 IPR013083 -
Gma11g01351 884 Pfam SAP domain 5 35 IPR003034 -
Gma11g01351 884 MobiDBLite consensus disorder prediction 791 855 - -
Gma11g01351 884 MobiDBLite consensus disorder prediction 798 822 - -
Gma11g01351 884 ProSiteProfiles Zinc finger SP-RING-type profile. 339 422 IPR004181 GO:0008270
Gma11g01351 884 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 4 803 - -
Gma11g01351 884 SMART sap_9 4 38 IPR003034 -
Gma11g01351 884 SUPERFAMILY FYVE/PHD zinc finger 100 162 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01351 Gma-Chr11 11736875 11747304 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma11g01351 PHD 2.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01351 - - gmx:100793735 1700.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01351 11 11736875 11747304 Gma11g01351 11 11736875 11747304 ECH
Gma12g00633 12 5299691 5310080 Gma11g01351 11 11736875 11747304 GST
Gma13g02924 13 43799337 43807855 Gma11g01351 11 11736875 11747304 PCT
Gma12g01612 12 36062425 36074203 Gma11g01351 11 11736875 11747304 PCT
Gma11g01351 11 11736875 11747304 Gma13g02924 13 43799337 43807855 PCT
Gma11g01351 11 11736875 11747304 Gma12g01612 12 36062425 36074203 PCT