Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01344 ATGGACTTCACCCAAGACTTGCACTGTCTCCTATCTGAGCAACGCCGCAAGCTCGCCGCCGCAGAGGCCATGGAATTGGACCTCGACTTCGCCTTCCGCCTCCAGTTAAAGGAAGCCCTCGCGGCCTCCCTCGCCGCCCAGCCCTCCTCCTCCTCCGCCGCCGCCGCCGCGATCATCGAACAACCCGTCGTCGTCATCCACGATGACGACGTCAACGCCATGACGCTGCAGCGCGAGGAGCTGGCGCGTATGGAGCGCGAGATGAAGGACCGGGAGCAGAGCGAGGCGGAGACGCTTAAAATGAGAGAGGAACTCTGCCGTCGGATCCACGACGAGAAGGTGGCGAGGGAGATTTCCGCGATTCCCGAGAAGGACTGGCAGCAGTGGGGAGACAACTTCGAGAAACCATTCGGAGAGGGCTCGTCGTCTTCGTCGCTGAGTAGAGAGGAAGGCGTGGTTAGGGTTTACTTCAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGACGGAAGGTCGTGTTGTCTGGGATTGGGGTTGCGATTTGCGACCTTAGCGATAATTTGATATTCGAGGTTTCTAAGTCGCTCATTGGAAATGGCACTAGCAAGGTCGCTGCGGAGATTAAGGCTTTGATCGAGGCTTTCAATGCCGCCATTGCTTTGGACTTGAAGCGCGTCGTTTATTGCTGCGATTATTATCCCCTTTTCCAATTTGTGAGTGGAAAATGGCCTGCAAAACAGCGGAAGATTGCTATTTTGGTTGATCAAGTGAATCTGCTTCAAAGGAAGTTTTCATACTGCAATCCAAGGTTTGTGGCCAGACATGATGTCAAGTTTGCATTTAAGCTTGCAAGAGATGCAATTGAATCTCAGTCCACAAGACTTGCAGAATCTGGGAGTAGGAGTTTGAATGAAACTTGTGTCATATGTTTGGAGGAAACTGATGTTGGTCAGATTTTTTCAGTTGATGGCTGTCAACACCGCTATTGCTTCTCATGCATGAAACAGCATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAGTGCCCTCATCAGGGGTGCAAGTATGAGCTCCTAGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACCGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCTGTTGCTGAAAAAATTTATTGTCCTTATCCTACGTGCTCTGCATTAATGTCAAAAACTGAGGTCTTAGAGTACTCCAAAGATATCACTGGTCAATCTGAACAATCTGAACCCAAGATATGCCTAAAATGTCGTGGCCTTTTCTGTTTTAACTGCAAGGTCCCTTGGCATAGTGGTATGACATGTAATACTTACAAAAGGATGAATCCTATTCCTCCTGCAGAAGATTTGAAGCTGAAGTTTCTGGCATCAAGGAGCCTATGGCAACAGTGTCTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTTACGAATTTTGCTATAACTGTGGAGCAGAGTGGAAGGACAAAAAAGCAACATGTGCTTGCCCTCTTTGGGCCGAGGAGAATATTTGGTTAGATGATCATGAGGAAGAGTTGGAAGAAGAAGAAGAAGATGATGATGATGATTATGATGATTATAGGTCTGATTATCCTGATGATTATTATTATTAA 1674 0.4779 MDFTQDLHCLLSEQRRKLAAAEAMELDLDFAFRLQLKEALAASLAAQPSSSSAAAAAIIEQPVVVIHDDDVNAMTLQREELARMEREMKDREQSEAETLKMREELCRRIHDEKVAREISAIPEKDWQQWGDNFEKPFGEGSSSSSLSREEGVVRVYFKGLVSEENVRGRKVVLSGIGVAICDLSDNLIFEVSKSLIGNGTSKVAAEIKALIEAFNAAIALDLKRVVYCCDYYPLFQFVSGKWPAKQRKIAILVDQVNLLQRKFSYCNPRFVARHDVKFAFKLARDAIESQSTRLAESGSRSLNETCVICLEETDVGQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHQGCKYELLVDSCQKFLTQKLTETMQQRKLEASIPVAEKIYCPYPTCSALMSKTEVLEYSKDITGQSEQSEPKICLKCRGLFCFNCKVPWHSGMTCNTYKRMNPIPPAEDLKLKFLASRSLWQQCLKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEENIWLDDHEEELEEEEEDDDDDYDDYRSDYPDDYYY 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01344 557 Coils Coil 526 550 - -
Gma11g01344 557 MobiDBLite consensus disorder prediction 529 549 - -
Gma11g01344 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 385 IPR013083 -
Gma11g01344 557 ProSiteProfiles TRIAD supradomain profile. 302 526 IPR044066 -
Gma11g01344 557 SUPERFAMILY RING/U-box 460 523 - -
Gma11g01344 557 Pfam IBR domain, a half RING-finger domain 465 514 IPR002867 -
Gma11g01344 557 Pfam IBR domain, a half RING-finger domain 375 446 IPR002867 -
Gma11g01344 557 MobiDBLite consensus disorder prediction 529 557 - -
Gma11g01344 557 Pfam Reverse transcriptase-like 172 286 IPR002156 GO:0003676|GO:0004523
Gma11g01344 557 SUPERFAMILY RING/U-box 304 385 - -
Gma11g01344 557 Gene3D - 153 295 IPR036397 GO:0003676
Gma11g01344 557 ProSiteProfiles Zinc finger RING-type profile. 306 350 IPR001841 -
Gma11g01344 557 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 28 526 - -
Gma11g01344 557 SUPERFAMILY RING/U-box 388 451 - -
Gma11g01344 557 ProSitePatterns Zinc finger RING-type signature. 324 333 IPR017907 -
Gma11g01344 557 Coils Coil 74 94 - -
Gma11g01344 557 SUPERFAMILY Ribonuclease H-like 175 287 IPR012337 -
Gma11g01344 557 SMART ibrneu5 373 446 IPR002867 -
Gma11g01344 557 SMART ibrneu5 447 514 IPR002867 -
Gma11g01344 557 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 526 IPR031127 GO:0004842|GO:0016567
Gma11g01344 557 Gene3D - 443 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01344 Gma-Chr11 11676601 11680710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01344 154 505 C3H Transcription Factor Family AT2G19610 33.894 2.33e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01344 - - gmx:100790037 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01344 11 11676601 11680710 Gma11g01344 11 11676601 11680710 ECH
Gma12g00639 12 5343062 5346615 Gma11g01344 11 11676601 11680710 GST