Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01343 ATGGAGAGCAGCGACACATACACCCCCACTTCCTCTGCCCCACTTTCTCACTCCCCCTCTAATTCCTCTTCTTCCTCACCACCACCACCTCCCACTGTTGTGATGAGTCCTTGTGCTGCATGCAAGATTTTGAGGAGAAAATGTGCAGAGAAATGTGTGTTGGCACCTTATTTCCCTCCAACTGAACCTGCCAAGTTTACTATTGCACACCGTGTATTTGGTGCTAGCAACATCATCAAGTTCCTTCAGGAGCTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTGTATGAGGCTAGTGCAAGAATAAGAGACCCTGTATATGGTTGTGCAGGGGCAATTTGCCAGCTCCAAAAGCAGGTCAATGAACTTCAAGCACAATTGGCCAAGGCACAAGGTGAGCTTGTGAACATGCAGCTTCAGCAAGCCAATCTTGTGGCTCTAATTTGCATGGAAATGGCACAGAGTCCACAGGAATCACCACAACAATCAGTGGATAATTTCATTTCAACTCCTCCCCAGAGTGGTGGTGCATATCAAAGTGGCATGAACTTCTTTGAGGACAACACTAGCCTAAACTCACTATGGGAACAACCCCTTTGGACATGA 615 0.478 MESSDTYTPTSSAPLSHSPSNSSSSSPPPPPTVVMSPCAACKILRRKCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQGELVNMQLQQANLVALICMEMAQSPQESPQQSVDNFISTPPQSGGAYQSGMNFFEDNTSLNSLWEQPLWT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01343 204 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Gma11g01343 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 200 - -
Gma11g01343 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 24 200 - -
Gma11g01343 204 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
Gma11g01343 204 MobiDBLite consensus disorder prediction 1 32 - -
Gma11g01343 204 MobiDBLite consensus disorder prediction 1 22 - -
Gma11g01343 204 Coils Coil 116 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01343 Gma-Chr11 11660483 11662956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01343 33 204 AS2 family AT1G07900 66.667 6.13e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma11g01343 LOB 1.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01343 - - gmx:100789504 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01343 11 11660483 11662956 Gma11g01343 11 11660483 11662956 ECH
Gma12g00641 12 5368511 5370501 Gma11g01343 11 11660483 11662956 GST
Gma13g02928 13 43838719 43840847 Gma11g01343 11 11660483 11662956 PCT
Gma15g00431 15 3686146 3687823 Gma11g01343 11 11660483 11662956 PCT
Gma11g01343 11 11660483 11662956 Gma13g02928 13 43838719 43840847 PCT
Gma11g01343 11 11660483 11662956 Gma15g00431 15 3686146 3687823 PCT