Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01340 ATGGGAGCTGCTCGCAAGCTGAAGTCCCACCGAAGAAGGCAGAGGTGGGCTGACAAATCATACAAGAAATCACATCTTGGAAATGAATGGAAAAAGCCGTTCGCTGGATCATCTCATGCAAAAGGCATTGTTCTTGAAAAAATCGGGATTGAGGCTAAACAGCCAAACTCTGCCATTAGAAAATGTGCTCGAGTACAATTAATAAAAAATGGAAAGAAGATTGCAGCTTTTGTGCCAAATGATGGTTGCTTGAACTATACTGAAGAAAACATAAGTTTTGCTAAAAAAAAGGGAAGGGGAGGTGTTGGGGATGAAGTGCTTATTGCTGGTTTTGGCCGAAAAGGGCATGCAGTTGGAGATATCCCGGAGTTCGATTTAAGGTTGTGA 387 0.4238 MGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYTEENISFAKKKGRGGVGDEVLIAGFGRKGHAVGDIPEFDLRL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01340 128 Gene3D - 19 128 IPR012340 -
Gma11g01340 128 MobiDBLite consensus disorder prediction 1 19 - -
Gma11g01340 128 Pfam Ribosomal protein S12/S23 25 122 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma11g01340 128 PANTHER 40S RIBOSOMAL PROTEIN S23 1 124 - -
Gma11g01340 128 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 124 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma11g01340 128 SUPERFAMILY Nucleic acid-binding proteins 14 90 IPR012340 -
Gma11g01340 128 ProSitePatterns Ribosomal protein S12 signature. 53 60 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma11g01340 128 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01340 Gma-Chr11 11621632 11622186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01340 1 122 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 83.607 6.82e-68 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01340 K02973 - gmx:100306064 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01340 11 11621632 11622186 Gma11g01340 11 11621632 11622186 ECH
Gma11g01340 11 11621632 11622186 Gma12g00644 12 5404338 5404942 ECH
Gma03g01641 03 42540599 42542397 Gma11g01340 11 11621632 11622186 ECH
Gma19g01689 19 46198888 46202587 Gma11g01340 11 11621632 11622186 ECH
Gma10g00463 10 4490111 4491618 Gma11g01340 11 11621632 11622186 ECH