Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01339 ATGGATCCTTCTAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCCCACCAAGAGAGAAAACCAACGCCTCAGCCAGAACAAGCTCTAAAGTGCCCCAGATGTGACTCCACCAACACCAAATTCTGCTACTACAACAATTACAGCCTTTCCCAGCCAAGGTACTTCTGCAAGTCATGCAGGAGATATTGGACCAAAGGAGGTACACTTAGGAATGTCCCTGTGGGAGGAGGGTGCAGGAAGAACAAAAGGTCATCATCATCATCTTCAACATCAAAGAGAGTTCAAGATCAAGCATTCACACCAAATGTTAACCCTCTCACTGGCCTTCCTTCATTAATGTCTTATGACTCCAATGACCTCACTCTTGCATTGGCAAGGCTTCAAAAGCAGTCATGTGGGCAATTAGGGTATGATGATCATGATCTTTCAATGTTGGGGAACCACCACACAAACACCCCATGTGGTGATAATATCCTTGGCATGCATCACCACTCATCATCCTCATCCACAAACCCAGGGTTCTTGGATGCCCTCAGAAGTGGGTTCCTTGGAACACAAAGTAATAATAATATGCATCAGAATATGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGTGGTGGGGTTGGGGTTAGTAGTAGTGGAGAGATGATGATGATGATGATGCCTTATAATAATGATCAAGAAATGAGTATTGCATCCACACAGGCAGTGACAGTCACCACCATGAAGCAAGAGATTTGCAACGGAAGGGAACAAAAGGTGTTGTGGGGTTTTCCATGGCAACTCAATGGAGACACAAACATGGGTGAACTTGACTCAGGAAGAGCTAGTAATTGGAATGGCATCAATTCATCATGGCATGGACTTCTCAACAGTCCCCTAATCCTGATCGAGCCTGAACAGTTAGAATCAATTTTGCAGAGCTTTGGATTTATAATTAATGTGATGGTTTCAAGATATTCTTCAAAGATTGCATCTTATTCTCACCAGCAACGAACAATATTTTAA 1053 0.4368 MDPSSGQHQQMSSQSLENMLACSKAHQERKPTPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSTSKRVQDQAFTPNVNPLTGLPSLMSYDSNDLTLALARLQKQSCGQLGYDDHDLSMLGNHHTNTPCGDNILGMHHHSSSSSTNPGFLDALRSGFLGTQSNNNMHQNMYYGYGNGDMGEVDNGGGVGVSSSGEMMMMMMPYNNDQEMSIASTQAVTVTTMKQEICNGREQKVLWGFPWQLNGDTNMGELDSGRASNWNGINSSWHGLLNSPLILIEPEQLESILQSFGFIINVMVSRYSSKIASYSHQQRTIF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01339 350 MobiDBLite consensus disorder prediction 1 40 - -
Gma11g01339 350 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Gma11g01339 350 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Gma11g01339 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 309 IPR045174 GO:0003700|GO:0006355
Gma11g01339 350 MobiDBLite consensus disorder prediction 1 21 - -
Gma11g01339 350 MobiDBLite consensus disorder prediction 83 115 - -
Gma11g01339 350 MobiDBLite consensus disorder prediction 90 115 - -
Gma11g01339 350 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Gma11g01339 350 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01339 Gma-Chr11 11616899 11619746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01339 1 310 C2C2-Dof Transcription Factor Family AT2G28510 39.706 8.65e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma11g01339 zf-Dof 7.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01339 - - gmx:778106 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01339 11 11616899 11619746 Gma11g01339 11 11616899 11619746 ECH
Gma12g00645 12 5407489 5409564 Gma11g01339 11 11616899 11619746 GST
Gma13g02933 13 43887757 43889350 Gma11g01339 11 11616899 11619746 PCT
Gma15g00427 15 3650204 3652254 Gma11g01339 11 11616899 11619746 PCT
Gma11g01339 11 11616899 11619746 Gma13g02933 13 43887757 43889350 PCT
Gma11g01339 11 11616899 11619746 Gma15g00427 15 3650204 3652254 PCT