Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01330 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGTTTAGTAACGGTGAGTCGCCGTTACCGTTAGAGAAGTTTCCAGACGGTTTGAGGAACCAAATGGCCGAGTCAGGGACTTCGAATTCCTCCGTGGTGAATGCGGACGGGTCCAGTAACGGCGGCGGCGACGAGGACTCGGACTCCACACGAGCTGCTGATGACGTGTACACCACTTTCAATTTCGATATCCTTAAAGTCGAAGGCGCGAACGGCTTCGTAACGAAGGAGCTCTTTCCGGTGATGAGTGAAGGAGCTAAAGGACACGCTACGTCGTCGTTTTCAGGGACGAATGGTTTCGTGGATCTCTCGTTCGATGGCGATGGAGGGAACACTAGTGAGATGAAGATGCTTCAGCCTCAGAATCAGAATCAGACTCAAACGCGAACTCAGACACAGCAACCAGCGAAAAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCGCAATACAGAGGGGTTACTTTTTACAGAAGGACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCCAGAGCCTATGATCGAGCCGCTATTAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTGAGTGATTATGAGGATGACCTTAAACAGATGCAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGTCGCCAAAGTACTGGTTTCTCAAGAGGAAGCTCTAAATACCGAGGAGTAACACTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTTCTTGGCAAAAAGTATATATATCTTGGACTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACTTATGAAGGAGAGCTGAAATCTGCAGCCATTAATGAAGGAGGCAGTCAGAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGACCTCCCAAAGAAAATTGGGGGCAACTTCAGTTCCCCTCCTTCCCTTACAATACACATGGTGGAAGAAGTTCAATGATGGAAACCAATGTTAGTTCTGGAATTGGTAATCCATCTTTGAAAAGGATGGTTGCAACTGAAGATCGTCCTTCATTATGGAATGGCATGTCTCCTAATTTCTTTCCCAATGGGGAAAGAGCAGAGAGAATCGGCGTTGATCCTTCAAACGGACTCCCCAACTGGGCGTGGCAAACACATGGCCAGGTCAATGCTACCCCAGTACCAACGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGGCTGCCATCTTTCCAACAAGTTCTATGAACTCAATTCCCCAGAGTCTCTGTTTTACTTCATCCAGCATGCCTACCCGCAATGCATCTGAATATTATTACTAG 1461 0.475 MLDLNLNAEWTDSFSNGESPLPLEKFPDGLRNQMAESGTSNSSVVNADGSSNGGGDEDSDSTRAADDVYTTFNFDILKVEGANGFVTKELFPVMSEGAKGHATSSFSGTNGFVDLSFDGDGGNTSEMKMLQPQNQNQTQTRTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGELKSAAINEGGSQNLDLNLGIATPGPPKENWGQLQFPSFPYNTHGGRSSMMETNVSSGIGNPSLKRMVATEDRPSLWNGMSPNFFPNGERAERIGVDPSNGLPNWAWQTHGQVNATPVPTFSAAASSGFSISATFPSAAIFPTSSMNSIPQSLCFTSSSMPTRNASEYYY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01330 486 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 463 - -
Gma11g01330 486 SMART rav1_2 253 316 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 SMART rav1_2 161 223 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 CDD AP2 161 219 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 CDD AP2 252 312 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 ProSiteProfiles AP2/ERF domain profile. 253 310 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 ProSiteProfiles AP2/ERF domain profile. 161 217 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 MobiDBLite consensus disorder prediction 11 62 - -
Gma11g01330 486 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Gma11g01330 486 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 PRINTS Ethylene responsive element binding protein signature 292 312 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 MobiDBLite consensus disorder prediction 117 162 - -
Gma11g01330 486 MobiDBLite consensus disorder prediction 33 58 - -
Gma11g01330 486 Gene3D AP2/ERF domain 252 311 IPR036955 GO:0003700|GO:0006355
Gma11g01330 486 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Gma11g01330 486 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 463 - -
Gma11g01330 486 MobiDBLite consensus disorder prediction 126 150 - -
Gma11g01330 486 Pfam AP2 domain 252 302 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Gma11g01330 486 SUPERFAMILY DNA-binding domain 252 311 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01330 Gma-Chr11 11508232 11512862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01330 75 336 AP2-EREBP Transcription Factor Family AT4G36920 65.683 8.88e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gma11g01330 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01330 K09284 - gmx:100812898 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01330 11 11508232 11512862 Gma11g01330 11 11508232 11512862 ECH
Gma11g01330 11 11508232 11512862 Gma12g00653 12 5505492 5509894 ECH
Gma12g00653 12 5505492 5509894 Gma11g01330 11 11508232 11512862 GST
Gma13g02939 13 43957771 43962210 Gma11g01330 11 11508232 11512862 PCT
Gma15g00423 15 3589693 3594385 Gma11g01330 11 11508232 11512862 PCT
Gma11g01330 11 11508232 11512862 Gma13g02939 13 43957771 43962210 PCT
Gma11g01330 11 11508232 11512862 Gma15g00423 15 3589693 3594385 PCT