Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01299 ATGGAATTGGCCCGCCACAGCCGGCTTCTCCCTCTGCGCAGGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAGTTGATAAGAAGAACGACCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAGTTAAGTCTGGTGCTACCTTTAAGAAGAAGGCAAAGAAGATCCGAACTTCTGTCACTTTCCACAGACCGAGGACATTGAAGAAGGATAGGAACCCCAAGTACCCTCGCATTAGCGCGCCTCCAAGAAATAAGCTTGATCATTATCAGATCCTGAAATACCCTCTGACCACTGAATCCGCCATGAAGAAGATTGAGGACAACAACACTTTGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAA 531 0.4689 MELARHSRLLPLRRNWEHSTGRVSSMAPKVDKKNDPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPRTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01299 176 Gene3D - 57 176 IPR012677 -
Gma11g01299 176 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 93 169 IPR012678 GO:0003735|GO:0005840|GO:0006412
Gma11g01299 176 Pfam Ribosomal protein L23 96 158 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gma11g01299 176 PANTHER 60S RIBOSOMAL PROTEIN L23A 26 176 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gma11g01299 176 Hamap 50S ribosomal protein L23 [rplW]. 96 176 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gma11g01299 176 Pfam Ribosomal protein L23, N-terminal domain 37 86 IPR005633 -
Gma11g01299 176 ProSitePatterns Ribosomal protein L23 signature. 154 169 IPR001014 -
Gma11g01299 176 TIGRFAM uL23_arch: ribosomal protein uL23 100 176 IPR019985 GO:0003735|GO:0005840|GO:0006412
Gma11g01299 176 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 26 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01299 Gma-Chr11 11097712 11100708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01299 49 176 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.844 1.74e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01299 K02893 - gmx:100779362 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01299 11 11097712 11100708 Gma11g01299 11 11097712 11100708 ECH
Gma11g01299 11 11097712 11100708 Gma12g00591 12 4960733 4962459 ECH
Gma12g00591 12 4960733 4962459 Gma11g01299 11 11097712 11100708 GST
Gma13g02967 13 44226925 44228272 Gma11g01299 11 11097712 11100708 PCT
Gma11g01299 11 11097712 11100708 Gma13g02967 13 44226925 44228272 PCT