Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01298 ATGGTGTGTGGAATTTGCCTTGGTAGAAACCAGGTTCAACGGCGACTTCTCGACGAGTCCATTGCCGATGATCCTTCTCTGCAGCAGCTTCAGAGCCGTGGATTGGAGTTCACTGTGGTGCAGTCTCTTCCCACGTTTCAGTTCAAGAAAAACGAGGGAGAACAAGAAAAGGCTGCAATTAGCGTGGAGTGTGCCATTTGCCTCGGAGAGTTTGAGGAAGGGGAGTGGCTGAAACATCTCCCACACTGCAGCCATAGTTTCCATGTTTCATGCATTGACACGTGGTTTCAGTCTCATTCGAATTGTCCTCTTTGTAGATCAGTTGTTCATCATCACATCCTTCAGTGTTCTGTAGCTTCTCACACATTGCTTCAGCCTTTGAGGAGGGAAGACTTTGAAAGGGTTCAATCCATTCACTCTTAA 423 0.4728 MVCGICLGRNQVQRRLLDESIADDPSLQQLQSRGLEFTVVQSLPTFQFKKNEGEQEKAAISVECAICLGEFEEGEWLKHLPHCSHSFHVSCIDTWFQSHSNCPLCRSVVHHHILQCSVASHTLLQPLRREDFERVQSIHS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01298 140 Pfam Ring finger domain 63 106 IPR001841 -
Gma11g01298 140 PANTHER RING-H2 FINGER PROTEIN ATL16 27 125 - -
Gma11g01298 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 112 IPR013083 -
Gma11g01298 140 PANTHER RING-H2 FINGER PROTEIN ATL16 27 125 IPR044600 GO:0016567|GO:0016740
Gma11g01298 140 SMART FANCL_C_2 60 114 - -
Gma11g01298 140 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
Gma11g01298 140 SUPERFAMILY RING/U-box 42 112 - -
Gma11g01298 140 SMART ring_2 64 105 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01298 Gma-Chr11 11096896 11097318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01298 24 109 Rapid Response to Elicitors AT3G16720 51.685 1.67e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01298 - - gmx:121172630 296.204