Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01293 ATGTCTAGGACGCTAGTGCAGCCAATAGGACAGAAGAGGCTAACAAATGTGGCAGTGGTGCGTCTGAAGAAACATGGCATGCGCTTCGAAATCGCTTGCTACCCTAACACCGTCCTCTCTTGGCGTTCTGGCGTGGAAAAGGACCCGGATGAAGTGCTGCAGTCCCACACTGTTTATACCAATGTTTCCAAAGGGGTTCTTGCCAAGTCCAAGGATTTAATTTCAGCTTTTGGCACCGATGACCACTCCAAAATTTGCTTAGATATTTTAAAGAAAGGGGAGCTTCAGGTAGCTGGGAAAGAGAGGGAATCATTGTTATCGAGTCAGTTCAGGGATATTGCGACCATTGTGATGCACAAGACTTACAATCCTGAGACTCAGCGTCCATACACTATCAGTATGATTGAACGCCTCATGCGGGAAATCCATTTTGCTGTTGATCCACACAGCACCTCCAAGAAGCAGGCTCTGGAGTTAATTCAAGAGCTTCAGAAGCACTTCCCTATAAAACGGTGTCCGTTGAGAATACGTGCTACTGCTCCTGATGACCAGGTGCCTGAACTTTTAGGAAAGCTGAATGAATGGAATGCCACTGTTATTTCTAAAGAAGGATCTTCTGCTGTTATTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTGGAGGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATATACCTGAAGCCTTGCCCAAAGAAACTTATGATTCTGTGCTTAAACTGAATGAGAAACTTCAAAAGCAAACAATTTCATCTACTAGTAGGCCTACCGAGGGACAACAAAAGCAAAACAAGTGCAGCACATGTAATGTTTCTTTTGATGACACTAAGCTGTACAGGGAACATCACAAGAGTGAATGGCACAAGCACAATATCAAGCGTAAGACAAGGCAACTCCCACCACTTACTGAGGAAGAGTGCATGGCTGACATGGAATTGGGTGATTCAAAATCTGATTTGAAGGATTATTCATTTTAA 1068 0.4307 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDPDEVLQSHTVYTNVSKGVLAKSKDLISAFGTDDHSKICLDILKKGELQVAGKERESLLSSQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHSTSKKQALELIQELQKHFPIKRCPLRIRATAPDDQVPELLGKLNEWNATVISKEGSSAVIFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVEGDTQVEQYNDYEDIPEALPKETYDSVLKLNEKLQKQTISSTSRPTEGQQKQNKCSTCNVSFDDTKLYREHHKSEWHKHNIKRKTRQLPPLTEEECMADMELGDSKSDLKDYSF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01293 355 PANTHER BNAANNG06530D PROTEIN 1 355 - -
Gma11g01293 355 Gene3D Classic Zinc Finger 285 344 - -
Gma11g01293 355 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 229 IPR002140 GO:0042256
Gma11g01293 355 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 355 IPR039100 -
Gma11g01293 355 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Gma11g01293 355 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Gma11g01293 355 Gene3D - 100 172 IPR037188 -
Gma11g01293 355 ProSitePatterns Zinc finger C2H2 type domain signature. 296 318 IPR013087 -
Gma11g01293 355 SUPERFAMILY beta-beta-alpha zinc fingers 287 341 IPR036236 -
Gma11g01293 355 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Gma11g01293 355 Gene3D - 174 248 - -
Gma11g01293 355 Gene3D - 1 96 IPR036786 -
Gma11g01293 355 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01293 Gma-Chr11 11037350 11039701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01293 27 355 C2H2 Transcription Factor Family AT1G43860 58.841 2.13e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01293 K14574 - gmx:100776352 720.694