Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01291 ATGGCTAGTTGTTTAATGTTACTAACCAAAGTTAGTGATACCGAAACCCCATCAAGAAAGAGGGTTCTAAGTGGTGGTGATTTTAAGTGCAAGACTTGTAACAGGAAATTCCAATCGTTTCAAGCACTTGGGGGGCACCGAGCCAGCCACAAGAAGCTAAAGCTCATGGCTTCAAACCTTTCGTGTTCGACCGTGACACAAAAGATGCACCAGTGCCCCATTTGTGGAATTGAATTTGGGATTGGACAAGCACTGGGAGGGCACATGAGAAAACATAGAGCTTCCTTAAACGATGGTTTGATAACTCATGATCATGTTGTGCCAACATCTAGTGGTACTAAAAGGCTTCGTTTGTGCTTGGACTTGAACTTGGCACCGTACGAGAATGATCTCAACCTCAATTTAAGGACACCTACTTTAAATTTGTTCGTTTGA 435 0.4299 MASCLMLLTKVSDTETPSRKRVLSGGDFKCKTCNRKFQSFQALGGHRASHKKLKLMASNLSCSTVTQKMHQCPICGIEFGIGQALGGHMRKHRASLNDGLITHDHVVPTSSGTKRLRLCLDLNLAPYENDLNLNLRTPTLNLFV 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01291 144 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Gma11g01291 144 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Gma11g01291 144 SUPERFAMILY beta-beta-alpha zinc fingers 28 92 IPR036236 -
Gma11g01291 144 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Gma11g01291 144 PANTHER ZINC FINGER PROTEIN ZAT5 1 143 - -
Gma11g01291 144 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 143 - -
Gma11g01291 144 SMART c2h2final6 70 92 IPR013087 -
Gma11g01291 144 SMART c2h2final6 28 50 IPR013087 -
Gma11g01291 144 Gene3D Classic Zinc Finger 7 98 - -
Gma11g01291 144 Pfam C2H2-type zinc finger 70 94 - -
Gma11g01291 144 Pfam C2H2-type zinc finger 28 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01291 Gma-Chr11 11012266 11013053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01291 1 135 C2H2 Transcription Factor Family AT2G28710 45.578 4.69e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g01291 zf-C2H2_6 9.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01291 - - gmx:112998408 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01291 11 11012266 11013053 Gma11g01291 11 11012266 11013053 ECH
Gma12g00585 12 4901966 4904193 Gma11g01291 11 11012266 11013053 GST
Gma13g02974 13 44292275 44292917 Gma11g01291 11 11012266 11013053 PCT
Gma15g00392 15 3259423 3260141 Gma11g01291 11 11012266 11013053 PCT
Gma11g01291 11 11012266 11013053 Gma13g02974 13 44292275 44292917 PCT
Gma11g01291 11 11012266 11013053 Gma15g00392 15 3259423 3260141 PCT