Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01284 ATGTCTGCAGCTATGGATATGTCGCTCGACGACATAATCAAGAACAACAAAAAATCTGGATCCGGAAGTTCCCGTGGCCGGATCCGACCCTCCGGTTCCGGACCTTCTCGCCGGTTCCCCAACCGTGCCGCCAACCGCGCCGCTCCTTATGCCACCGCTAAGGCGCCGGAGGCGACGTGGCAGCACGATTTATATGCAGATCAGCAAGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCGTGCGGCTTCCATAGAAACTGGGACTAAGCTTTACATTTCAAACTTGGATTATGGTGTTTCCAGTGACGATATTAAGGAATTGTTTGCTGAAGTTGGTGACCTGAAACGGCATGCGGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAGTTGGATGGGAAACCAATGAAGATTGAGATTGTGGGAACCAACATTTCCACACCTGGTGTGGCTCCTGCTCGTAACGGGGCTATTGGAAATTTTGATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTAAGAAGGCCAGGAGGAAGAGGGCAGGGCGTTCGAAGGGATCGGGGACGGGGAAGAGGTCGTGGCGGAGCAGGTCGCGGTGAAAAGGTATCTGCTGATGATCTTGATGCGGATTTGGAGAAGTATCATGCAGAGGCAATGCAATTGAACTGA 744 0.5188 MSAAMDMSLDDIIKNNKKSGSGSSRGRIRPSGSGPSRRFPNRAANRAAPYATAKAPEATWQHDLYADQQVAAAGYPAQGGRAASIETGTKLYISNLDYGVSSDDIKELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPARNGAIGNFDGVPRSGQGRGGALRRPGGRGQGVRRDRGRGRGRGGAGRGEKVSADDLDADLEKYHAEAMQLN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01284 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Gma11g01284 247 CDD RRM_THOC4 89 163 - -
Gma11g01284 247 Gene3D - 67 228 IPR012677 -
Gma11g01284 247 SMART rrm1_1 90 162 IPR000504 GO:0003723
Gma11g01284 247 Pfam C-terminal duplication domain of Friend of PRMT1 190 241 IPR025715 -
Gma11g01284 247 MobiDBLite consensus disorder prediction 14 30 - -
Gma11g01284 247 MobiDBLite consensus disorder prediction 204 233 - -
Gma11g01284 247 SUPERFAMILY RNA-binding domain, RBD 29 163 IPR035979 GO:0003676
Gma11g01284 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Gma11g01284 247 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 246 - -
Gma11g01284 247 MobiDBLite consensus disorder prediction 183 233 - -
Gma11g01284 247 MobiDBLite consensus disorder prediction 1 54 - -
Gma11g01284 247 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 246 - -
Gma11g01284 247 SMART FoP_duplication_2 172 247 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01284 Gma-Chr11 10949216 10954358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01284 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 1.93e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01284 K12881 - gmx:100817317 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01284 11 10949216 10954358 Gma11g01284 11 10949216 10954358 ECH
Gma11g01284 11 10949216 10954358 Gma12g00578 12 4853025 4858951 ECH
Gma12g00578 12 4853025 4858951 Gma11g01284 11 10949216 10954358 GST
Gma13g02982 13 44334789 44339084 Gma11g01284 11 10949216 10954358 PCT
Gma11g01284 11 10949216 10954358 Gma13g02982 13 44334789 44339084 PCT