Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01269 ATGGAGGGTGAGAACGCGAGCAAGGTGATCGAATTGGTGAACGAGATAGCCAGCATCTCCGAGTACAGGCCTCCGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGCTGAAGCTTCTGATCCCGATGTTCGAGGAGATTAGGGACATGAACAAAGACGCGCTTCCCGAGGACACTTCCAACGCCGTCCTCGCCTTCAAGGAAGCTCTCCAATCCGCTAGGGAACTCCTCAGATTCGGAAGCGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGACGATATTATGAATAAGTTCTACGAGGTGACAGCTCAGTTGGAACAGTCATTGGGTGGTATTTCCCATGATAAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAGTTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGATGAACCAGATGTCAGGTTGTATGAGGATATGTTGTCTGTTTACAACAGCAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCAATTAGCTGAAAAATTGCAATTGATGGGAATAGCTGATCTTACTCAAGAATCACTTGCTTTGCATGAGATGGTGGCATCAAGTGGTGGGGATCCAGGAGCACGCATTGAGAAAATGTCAATGTTATTGAAGAAGATAAAGGATTTCGTGCAAATAGAAAATCTAGTCAAGGATGATAATTTAGGAGGAAAAGGCATTTTCTCAAAAGTCTATGGACTTGGGACAAATGAAAAGAGTCATCAGGCTCCTGTTATCCCTGATGATTTTCGATGTCCGATTTCCCTGGAATTAATGAAGGACCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGTACTTGTATTGAGAAGTGGTTGCAAGCAGGGCACGGGACCTGCCCCAAAACACAGCAGACTCTCACTAGTACTGTTCTCACACCTAACTATGTATTACGGAGCCTCATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCTAGCGATTCACAACCTAGTAAATCAGCATCAGCCTACTCTCCTGCTGAGCAAAGTAAGATTGAAAGTCTTCTCCAAAAGCTCACATCTGTGAGTCCTGAAGACCAGAGATCAGCTGCTGGCGAGATCCGCCTTCTTGCAAAGCGCAACGCAGATAACCGCGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTTGTTGGTCTTTTGTCTGTGCCTGACTCCCGCACTCAAGAACATGCCGTGACAGCGCTCCTGAATCTTTCCATATATGAAAACAACAAAGGAAGTATTGTTTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAGGCTCGGGAAAATGCAGCAGCAACACTTTTCAGCCTTTCAGTAATAGATGAAAACAAGGTTACAATTGGATCTTTAGGAGCCATACCACCACTAGTGACACTGCTAAGTGAGGGTAACCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTATCAGGGCAACAAGGGAAAGGCAGTGAGGGCTGGCGTTATTCCCACGCTGATGCGACTACTGACTGAACCTAGCGGGGGAATGGTGGATGAAGCATTAGCTATTTTGGCAATATTGGCTAGCCATCCTGAAGGGAAGGCTACTATTAGAGCTTCAGAGGCAGTGCCGGTTTTAGTAGAGTTTATTGGGAATGGCTCACCAAGGAACAAAGAGAATGCAGCTGCCGTTTTAGTTCACCTCTGTTCTGGAGATCAACAATATCTTGCACAGGCACAAGAGCTGGGGGTGATGGGTCCACTGTTAGAATTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGGACAATTGCTAGAACGTATGAGCAGGTTAGTTGAGCAACAGCAGGAAGTTCCAATACAAACTGAAACTCAAGCTCAGAACGAGGATACCCAACCACCTTTGATTACTAACCCCGATGATTCCTAA 1986 0.4627 MEGENASKVIELVNEIASISEYRPPVKKQYCNLARRLKLLIPMFEEIRDMNKDALPEDTSNAVLAFKEALQSARELLRFGSEGSKLYLVLERDDIMNKFYEVTAQLEQSLGGISHDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLSVYNSSSDAATDPSVLSQLAEKLQLMGIADLTQESLALHEMVASSGGDPGARIEKMSMLLKKIKDFVQIENLVKDDNLGGKGIFSKVYGLGTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERTCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSDSQPSKSASAYSPAEQSKIESLLQKLTSVSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSLGAIPPLVTLLSEGNQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKATIRASEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKAGQLLERMSRLVEQQQEVPIQTETQAQNEDTQPPLITNPDDS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01269 661 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Gma11g01269 661 Pfam Armadillo/beta-catenin-like repeat 548 587 IPR000225 GO:0005515
Gma11g01269 661 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Gma11g01269 661 MobiDBLite consensus disorder prediction 635 661 - -
Gma11g01269 661 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Gma11g01269 661 Gene3D - 335 653 IPR011989 -
Gma11g01269 661 SUPERFAMILY RING/U-box 247 332 - -
Gma11g01269 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Gma11g01269 661 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Gma11g01269 661 Gene3D - 4 115 IPR036537 GO:0007166
Gma11g01269 661 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 644 - -
Gma11g01269 661 PANTHER U BOX DOMAIN-CONTAINING 4 644 - -
Gma11g01269 661 MobiDBLite consensus disorder prediction 333 348 - -
Gma11g01269 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 476 518 IPR000225 GO:0005515
Gma11g01269 661 CDD RING-Ubox_PUB 260 302 IPR045210 -
Gma11g01269 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 329 IPR013083 -
Gma11g01269 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Gma11g01269 661 SMART arm_5 589 629 IPR000225 GO:0005515
Gma11g01269 661 SMART arm_5 506 546 IPR000225 GO:0005515
Gma11g01269 661 SMART arm_5 424 464 IPR000225 GO:0005515
Gma11g01269 661 SMART arm_5 465 505 IPR000225 GO:0005515
Gma11g01269 661 SMART arm_5 383 423 IPR000225 GO:0005515
Gma11g01269 661 SMART arm_5 547 587 IPR000225 GO:0005515
Gma11g01269 661 MobiDBLite consensus disorder prediction 329 348 - -
Gma11g01269 661 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Gma11g01269 661 SUPERFAMILY ARM repeat 354 630 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01269 Gma-Chr11 10824549 10829214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01269 1 661 U-box Gene Family AT3G46510 69.670 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01269 - - gmx:100812160 1276.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01269 11 10824549 10829214 Gma11g01269 11 10824549 10829214 ECH
Gma12g00566 12 4745531 4750336 Gma11g01269 11 10824549 10829214 GST