Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01266 ATGGCAGACGGTGAGGATATTCAACCACTCGTCTGTGATAATGGGACAGGAATGGTTAAAGCTGGATTTGCTGGGGATGATGCTCCAAGGGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACGGGAGTGATGGTTGGCATGGGCCAAAAAGATGCATATGTCGGGGATGAAGCTCAGTCCAAGAGAGGTATATTAACTCTCAAATATCCCATTGAGCATGGTATTGTGAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTCGCTCCTGAGGAGCACCCAGTTCTGCTCACCGAAGCACCTCTCAACCCAAAGGCTAATCGGGAGAAAATGACCCAAATTATGTTTGAGACCTTCAATACCCCTGCCATGTATGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGTACAACTGGTATCGTTCTAGACTCTGGAGATGGTGTGAGCCATACCGTCCCCATTTACGAGGGCTACGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACGTGATCTCACTGATGCCTTGATGAAAATCCTTACAGAACGTGGTTATTCCTTCACTACCACAGCTGAGCGTGAAATTGTAAGGGACGTAAAGGAAAAGCTGGCTTATATTGCCCTTGATTATGAGCAAGAGCTTGAAACATCAAAAACCAGCTCTGCTGTTGAGAAGAGCTATGAGTTGCCGGATGGACAGGTCATCACCATTGGTGCTGAGCGTTTCAGATGTCCTGAAGTTCTCTTCCAGCCATCCATGATCGGAATGGAAGCCGCTGGCATTCATGAAACCACTTACAATTCAATCATGAAATGTGATGTCGATATTAGGAAGGACTTGTATGGAAACATCGTTCTCAGTGGTGGTTCTACCATGTTCCCAGGTATTGCTGACAGAATGAGCAAGGAAATCTCAGCTTTGGCCCCAAGCAGCATGAAGATTAAGGTGGTTGCTCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCTGAGTACGATGAGGCTGGTCCTTCAATTGTACACAGGAAATGCTTCTAA 1134 0.4762 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01266 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Gma11g01266 377 Gene3D - 10 371 - -
Gma11g01266 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Gma11g01266 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Gma11g01266 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Gma11g01266 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Gma11g01266 377 Pfam Actin 5 377 IPR004000 -
Gma11g01266 377 Gene3D - 140 340 - -
Gma11g01266 377 PANTHER ACTIN-97 1 376 - -
Gma11g01266 377 PANTHER ACTIN 1 376 IPR004000 -
Gma11g01266 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Gma11g01266 377 SMART actin_3 7 377 IPR004000 -
Gma11g01266 377 PRINTS Actin signature 28 37 IPR004000 -
Gma11g01266 377 PRINTS Actin signature 51 62 IPR004000 -
Gma11g01266 377 PRINTS Actin signature 63 85 IPR004000 -
Gma11g01266 377 PRINTS Actin signature 117 130 IPR004000 -
Gma11g01266 377 PRINTS Actin signature 142 161 IPR004000 -
Gma11g01266 377 PRINTS Actin signature 238 254 IPR004000 -
Gma11g01266 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01266 Gma-Chr11 10792827 10794631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01266 1 377 Cytoskeleton Gene Families AT3G12110 96.817 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01266 K10355 - gmx:100811630 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01266 11 10792827 10794631 Gma11g01266 11 10792827 10794631 ECH
Gma11g01266 11 10792827 10794631 Gma12g00564 12 4721929 4725393 ECH
Gma12g00564 12 4721929 4725393 Gma11g01266 11 10792827 10794631 GST
Gma13g02995 13 44458464 44460268 Gma11g01266 11 10792827 10794631 PCT
Gma15g00370 15 3118415 3121282 Gma11g01266 11 10792827 10794631 PCT
Gma11g01266 11 10792827 10794631 Gma13g02995 13 44458464 44460268 PCT
Gma11g01266 11 10792827 10794631 Gma15g00370 15 3118415 3121282 PCT