Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01265 ATGGCCATGGATGAGTATGAATGTCATGAGATGGTCCACGTGGCAGTTGGCAAGTCCCTCAAGAAAGCCGCCACTTTGCTTCAATGGTGTTTTACCCATTTCAGCAAACCACAGATTTTCTTACTTCATGTTCACCAACCTTCTACTATGATCCCCACACTGTTGGGGAAATTGCCAGCATCCCAAGCTAGTCCTGAAGTGGTGTCTGCTTATAGAATAGAAGAAAAAGAAGACACCAAGAGGCTTTTGGAGAAGTACTTGAGCCTTTGCCGTGCTGCTAAGGTTAAGGCAAGCAGTGTCATTGGTGAAGCTGATCAAGTCCAGAAAGGGATTGTTGACTTGGTTACTGTGCATAATGTCAGGAAGCTTGTTATTGGAGCAATACCAGAAAATTGCATGAAAATCAAAAGGAATTCCAGCAAAGCAAATTATGCTGCCAAAAATGCTCCCCCATTCTGTGAAATATGGTTTGTCTATAATGGTAAGCACATTTGGACAAGAGAAGCTTCCGAAACACCTCGTTCTTTGTCTTCACGTGCCCAACCTGAGACTACAACTGCAGAGAGTTTGAGTTGCAGATCTTTTCATGATGGTACGAAAGAATTGTTACATTCAGAATGTCTTCAATTAAATTCTACAAAGACTACAAGAAGTATGGTTCAGAGTGAAATCATTGAAGCAGAAGCTACTTTTTCATCCAAATCATCCAGTTGTAATAGTCATTGTTCTCCCCAACATTCGGCCGGTTGGTATTTAGATACTCATTCAGAGTTTGAGGAAGAAACAATTGATAGTCAACTTATTGAAACCAAGAGAGAAGCTAAGGCTGCAACAGACAAGGCCCTAGCAGAGCTGTTGAAGAGCAAAAGGTTGGAAGTCAAAGCCATTGAAGCCATTAGTAAGGTCAACTTTTTTGAGTCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTAAGAGCTACAATACAGGAGCAACAGATGTTCTTGGATGAGAAAGAAGAAATTGCTAGGGAGTTGGAAAGGACTGTGAGAAGTATTTCCCTTCTAGGCAATTGTGCACATGAAACCAACCATAAGCGAGATGAAGCTGAAAATGAACTATCACTAATTCAAGCATCCATCTCAAACCTGTGGCATGAAAAGCAGCAAATCAGGCAGCAGAAAATGGAAGCCCTACACTGGCTTGAGCGGTGGAAAAGTTGCGGACAAGTTGGAGCAGATCACTGCAATGGAGTCATTGGGTTTGCTGAAGAATTCCCTGAGCTTGCCGAATTTTCATTATCAGATCTTCAAAATGCCACATGCAATTTTTCTGAGAGTTTCAAAGTTATGGAGGGTGGATATGGTTCTATTTATAAGGGGGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATCCACACAACATGCAAGGATCATCAGAGTTTCATCAAGAGGCTCAAATTCTTGGTAGTCTCCAACACCCTCATCTGGTTACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCATTTGTATATGAGTACTTGCCCAGTGGAAGTCTCCAAGATTATCTATTCCGAAAAAGCAGTTTTCTGCCATTGACTAGGAACATCCGAGCACAATGGATTGCCGAAATTGCTACAGCTCTCTGCTTCTTGCATTCTTCAAAACCTGAAACTATTATCCACGGTGGTCTGACTCTTGAAACTGTCCTTCTGGACTCTGCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTGGTGAAAGAGGAGTCAGTTTATCTTCCTAACTTCCACTTCAGCACTGAGCCAAAGGGTTCTTTTACATATACAGATCCTGAATTTCAGAGAACTGGAGTACTGACACCTAAGTCTGACATATACTCTTTTGGAATCATCATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGTGGGTGAAGTACGGAGAGCAGTTTCTTGTGGAAAATTGTATCCAATTTTGGATTCTTCAGCTGGAGAATGGAATTCCACCATGGCAACACGATTGGCTGAACTAGGATTGCAATGCTGCCAACTGAACAGTAGAGTCAGACCAGAGTTAACACCTTCTCTAGTGAGAGAATTGAAGCAGTTGCTTGTTTTAGAAGAGCGACCTGTACCATCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAGGGAAGGCCATAAGTGAATGGCTGGAAAATGGACATGAAACTTCTCCTATGACTAATTTAAAATTGACTCACCTGAATCTCACTCCCAATCATGCACTTCGACTTGCTATCCAAGGCTGGCTTTGCAAATCTTGA 2361 0.4223 MAMDEYECHEMVHVAVGKSLKKAATLLQWCFTHFSKPQIFLLHVHQPSTMIPTLLGKLPASQASPEVVSAYRIEEKEDTKRLLEKYLSLCRAAKVKASSVIGEADQVQKGIVDLVTVHNVRKLVIGAIPENCMKIKRNSSKANYAAKNAPPFCEIWFVYNGKHIWTREASETPRSLSSRAQPETTTAESLSCRSFHDGTKELLHSECLQLNSTKTTRSMVQSEIIEAEATFSSKSSSCNSHCSPQHSAGWYLDTHSEFEEETIDSQLIETKREAKAATDKALAELLKSKRLEVKAIEAISKVNFFESAHAHEVKLRKEAEDALRATIQEQQMFLDEKEEIARELERTVRSISLLGNCAHETNHKRDEAENELSLIQASISNLWHEKQQIRQQKMEALHWLERWKSCGQVGADHCNGVIGFAEEFPELAEFSLSDLQNATCNFSESFKVMEGGYGSIYKGEMLGRTVAIRKLHPHNMQGSSEFHQEAQILGSLQHPHLVTLLGVCPEAWSFVYEYLPSGSLQDYLFRKSSFLPLTRNIRAQWIAEIATALCFLHSSKPETIIHGGLTLETVLLDSALSCKICEFGFSRLVKEESVYLPNFHFSTEPKGSFTYTDPEFQRTGVLTPKSDIYSFGIIILQLLTGRTPVGLVGEVRRAVSCGKLYPILDSSAGEWNSTMATRLAELGLQCCQLNSRVRPELTPSLVRELKQLLVLEERPVPSFFLCPIFQEIMHDPQVAADGFTYEGKAISEWLENGHETSPMTNLKLTHLNLTPNHALRLAIQGWLCKS 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01265 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 786 IPR013083 -
Gma11g01265 786 Pfam U-box domain 716 785 IPR003613 GO:0004842|GO:0016567
Gma11g01265 786 SUPERFAMILY Protein kinase-like (PK-like) 426 701 IPR011009 -
Gma11g01265 786 Gene3D Phosphorylase Kinase; domain 1 419 514 - -
Gma11g01265 786 SMART Ubox_2 719 782 IPR003613 GO:0004842|GO:0016567
Gma11g01265 786 Coils Coil 358 378 - -
Gma11g01265 786 PANTHER OS02G0152300 PROTEIN 8 785 - -
Gma11g01265 786 Pfam Protein tyrosine and serine/threonine kinase 448 698 IPR001245 GO:0004672|GO:0006468
Gma11g01265 786 Gene3D Transferase(Phosphotransferase) domain 1 515 714 - -
Gma11g01265 786 ProSiteProfiles Protein kinase domain profile. 442 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g01265 786 MobiDBLite consensus disorder prediction 170 191 - -
Gma11g01265 786 Gene3D HUPs 7 134 IPR014729 -
Gma11g01265 786 SUPERFAMILY RING/U-box 713 785 - -
Gma11g01265 786 Coils Coil 327 354 - -
Gma11g01265 786 CDD RING-Ubox_WDSUB1_like 720 761 - -
Gma11g01265 786 ProSiteProfiles U-box domain profile. 715 786 IPR003613 GO:0004842|GO:0016567
Gma11g01265 786 PANTHER OS10G0100500 PROTEIN 8 785 - -
Gma11g01265 786 CDD STK_N 12 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01265 Gma-Chr11 10783129 10789594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01265 10 783 U-box Gene Family AT2G45910 35.105 3.85e-153 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gma11g01265 PK_Tyr_Ser-Thr 1.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01265 - - gmx:100799032 1569.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01265 11 10783129 10789594 Gma11g01265 11 10783129 10789594 ECH
Gma13g02996 13 44462783 44467239 Gma11g01265 11 10783129 10789594 PCT
Gma15g00369 15 3110578 3114891 Gma11g01265 11 10783129 10789594 PCT
Gma11g01265 11 10783129 10789594 Gma13g02996 13 44462783 44467239 PCT
Gma11g01265 11 10783129 10789594 Gma15g00369 15 3110578 3114891 PCT