Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01261 ATGGGAGTTTGTTTGAGCACCCAAATTAAAGCTGGGTTAAATTCAAAGCATGTTAGTGCCGATGCAAAAGATCACAGCAGTCCAATTAGCAATAAAATTACAAAAGATGTCAGCACACCAATCAGTAAAGTCTCAGAGGTATCAGTGCCTCAGACTCCTCGGATTGAGGGTGAGATCTTGCAGTCATCCAATCTGAAGAACTTTAGTTTGACAGAACTCACAGCTGCCACAAGAAATTTCCGTAAAGACAGTGTTTTAGGAGGAGAAGGTGATTTTGGATCAGTTTTCAAGGGCTGGATTGATAATCAATCACTGGCTGCTGCCAAACCTGGCACTGGCGTTGTTGTTGCAGTGAAAAGACTTAGTCTGGATAGCTTCCAAGGTCAGAAGGATTGGTTGACAAGGCACGTTATGACTCATGAAGCAAGTCTCGAGGATGAAGTAAACTATCTAGGCCAGCTTTCTCATCCTCATCTAGTGAAATTAATTGGGTATTGCTTTGAAGATGAAGACCGACTTCTGGTCTATGAATTTATGCCTCGTGGTAGCTTGGAGTATCACTTGTTCATGAGAGGCTCGTATTTTCAACCTCTTTCTTGGGGTCTCCGTTTGAAAGTTGCTCTTGGCGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATACCGAGATTTCAAGACCTCAAATGTCTTGCTGGATTCAaattataatgcaaagcttgctgatttggggctggcaaaggacagaccaacacgtgagaaaagtcatgtctccaccagggtaatgggaacctatggatatgcagctcctgaatatcaaaccacagGAAATCTGAGTGCCAAGAGTGATGTCTTCAGTTTTGGAGTAGTCCTGCTGGAAATGTTATCTGGCAGGAGGGCTGTGGACAAGAATAGACCATCAGGACAACACAATTTGGTGGAATGGGCCAAACCATACTTAGCCAACAAACACAAACTTTTGCGTGTGTTGGATAATCGCCTTGAAGGCCAATATGCATTAGATGAGGCATGTAAGGTGGCTACCCTCTCTCTGCGATGCCTTGCAACAGAATCCAAGTTGAGACCAACCATGGACGAGGTTGTCACGGATTTGGAGCAGCTGCAGGTTCCCCATGTGAATCAAAATCGTTCTGTGAATGCCTCTCGCGGTCGTAGAAAAAGTGCTGATGATTTTACTCATGGTAGAATCGCCACAGCTTCTGTTTCCCCGCTCTCACATGACATTGCAAATACACTCAAAATAGCTGGAACTACTGCAGGCATATATAATTTTGGACAAAGCAAAGACAATGACAGGTTTTCAAAACGGATTCTGGGTTTCCAAGGGTGTGTGCCTCAGCCGCAGTGTGACCTTTTTGATCGAGTTTGTGTCCCGCCACGATGCCCGCAACGCCGCGGACCAGATGCACCGCAAGGTCCTCAACGGCAGGATCTCACCGCCACCATCGTCGCCGATAACGGCTGCGCCTCCGAGTTCATCCGCAAGCGCATCGACAACAGCACGGTGCTTCAAGTGCTCCAATTACGTCAAAATGCATACAATGAAATTGATGCTGCATAA 1593 0.4231 MGVCLSTQIKAGLNSKHVSADAKDHSSPISNKITKDVSTPISKVSEVSVPQTPRIEGEILQSSNLKNFSLTELTAATRNFRKDSVLGGEGDFGSVFKGWIDNQSLAAAKPGTGVVVAVKRLSLDSFQGQKDWLTRHVMTHEASLEDEVNYLGQLSHPHLVKLIGYCFEDEDRLLVYEFMPRGSLEYHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYNAKLADLGLAKDRPTREKSHVSTRVMGTYGYAAPEYQTTGNLSAKSDVFSFGVVLLEMLSGRRAVDKNRPSGQHNLVEWAKPYLANKHKLLRVLDNRLEGQYALDEACKVATLSLRCLATESKLRPTMDEVVTDLEQLQVPHVNQNRSVNASRGRRKSADDFTHGRIATASVSPLSHDIANTLKIAGTTAGIYNFGQSKDNDRFSKRILGFQGCVPQPQCDLFDRVCVPPRCPQRRGPDAPQGPQRQDLTATIVADNGCASEFIRKRIDNSTVLQVLQLRQNAYNEIDAA 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01261 530 Gene3D Phosphorylase Kinase; domain 1 56 178 - -
Gma11g01261 530 CDD STKc_IRAK 88 378 - -
Gma11g01261 530 Pfam Protein tyrosine and serine/threonine kinase 88 375 IPR001245 GO:0004672|GO:0006468
Gma11g01261 530 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 35 392 - -
Gma11g01261 530 SUPERFAMILY Protein kinase-like (PK-like) 64 378 IPR011009 -
Gma11g01261 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Gma11g01261 530 PANTHER OS01G0588500 PROTEIN-RELATED 35 392 - -
Gma11g01261 530 Gene3D Transferase(Phosphotransferase) domain 1 179 400 - -
Gma11g01261 530 ProSiteProfiles Protein kinase domain profile. 81 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01261 Gma-Chr11 10749223 10754145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01261 58 375 Glycoside Hydrolase AT3G07070 47.205 9.06e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma11g01261 PK_Tyr_Ser-Thr 5.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01261 - - gmx:100809679 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01261 11 10749223 10754145 Gma11g01261 11 10749223 10754145 ECH
Gma12g00560 12 4680336 4684031 Gma11g01261 11 10749223 10754145 GST
Gma13g03002 13 44510723 44515657 Gma11g01261 11 10749223 10754145 PCT
Gma15g00362 15 3071328 3074366 Gma11g01261 11 10749223 10754145 PCT
Gma11g01261 11 10749223 10754145 Gma13g03002 13 44510723 44515657 PCT
Gma11g01261 11 10749223 10754145 Gma15g00362 15 3071328 3074366 PCT