Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01253 ATGGAGTCCAACTTTACCGGTGCCGATGACCTGTTTGCTGAAGACAAGGGTATGCCGTATCTCTCAGACTCGCTTGGTTTTGCAACCATGGATCCTTCACCTGAAGACAACAACGACTTCTTAGAAACTGCCAACTTCATAAGCCACATACTGACGGAAGAGAACGTTGAACAGAGGCCATTCTATGACTCACTCACCTTGAACAGAAATCCTTCTACAATGCTCTCGCCAGCAACCTACCTCTTTCACCCATTCAACACCCTCTCGTTCTCAGTCCTGAAGATGAAACCACCACCAGCAGTAGCAACGACAGCAACAACAATTTTTCAGATGAAAATTCTCTTTAGAAGAGGGTTGGAGGAAGCTAGCAAATTTCTTCCTCCGGGGCCTAACCTTGGTAGAAAGAATCATGAGCACGAAGAGATAGACACTAGAGAAGAAGGAAGGAGAAGTAACAAGCAATCAGCACTTTCCCTTGTTGATGAGACTGACCTGTCAGATGCTTTTGATCGGGTGTTGATTCATGAGGGAAAACAGTGTGACAAACACAATTGTTTGCAGGGTGGATCAGTTAACGTTGAGGAACGAGATAGAGGTAAGGTTCGTTCAAAGAATCAAGAAGGGAGGAAGAAGGAAACAGTGGATTTAAGGAATCTTCTGTTGATGTGTGCACAGTCTGTGTATGCCAATGACAGCAGGACTGCCAATGAATTACTAAAGCAGATTAGGCAACACTCTTCTGCCATTGGGGATGCATCACAGAGGTTGGTTCATTACTTCGCCAATGGTCTCAAGACTTGCTTGATTGGGGACGGTACAGGTGCACAAGGAATGTATTTTTTTCTGACCTCTAAGAAGATCACTGCTGCTGAGTTTCTCACGACATACCTTGTTTTCCTTTCCGCCAGCCCTTTCAAGAAGTTTATACATTTCTTTGCAAATAAAATGATTATGAAAGCAGCTGCCAAGGCAGAAACCGTTCATGTTATTGATTTTGGCATCCTATATGGTTTCCAGTGTCCAAGTCTTATTAAGTTTTTGTCTAATAGGGAGAGTGGACCTCCCAAGCTTAGGATCACAGGGATAGAGTTTCCCCAACCTGGCTTTCGCCCCACAGAAAGAATTGAGGAAACAGGTCACTGTCTGGCTAACTATTGTAAGCATTACAATGTTCCCTTTGAGTACAATGCCATAGCATCGAAGAACCGGGAAAGCATTCAGGTTGAAGCCCTCAAAATTCAGAGCAACGAGCTAGTTGCTGTCAATTGTCACTTGAGGTTTGAGAATTTACTGAATGAATCTATTGAAGTGAACAGTCCTAGAAATGCAGTCCTTCATTTGATCAGGAAAATAAATCAGGATATTTTTACTCAGTCCATCACTAATGGATCTTATAATGCTCCTTTCTTTGCCACGCGGTTTAGGGAGGCTCTCTTTCATTATTCTGCTACTTATGAATTGATTGACACAGTCATACCTCGTGAAAACGAATGGAGGTTGATGATCGAGAGAGAGCTTTTGGGCCGGGAGATTATGAATGTTATAGCATGTGAAGGTTCTCAGAGGATTGAGAGGCCTGAGACATACAAACAGTGGCAGATTTTGTCTTGGATGAAGATAACAACTGGTTGCTTCAAGGTTGGAAGGGCCACATTTTGTATGCTTCCACTTGTTGGGTGCCAGCATAATGAGATGCTACTGGACTGGGTTCAGAACTCATACTATACTGAAGGTTTTGGTATCCTTGGTTTGGCTACCTCTACTTGCTTAACCTTCAGGTGCTGTGATGAAGATTGCAACAAGCTTTGCACGAAGTTACTTGCTTGTGAGAGGAGGCCCGAGACATACAAGCAATGGCAGGTTAGGAACATGAGGGCTGGATTTAAGCAATTGCCCTTGGATGAGCATCTCATTAACAAATTAAGATGCAAGTTGAAAGATGTGTACCACAGTGATTTAGTGCTTCTTGAAGATGGCAACTACATGCTGCAAGTTTGGAAGGGCCGAGTAGTTTATGCTTCCTCCTGTTGGGTGCCTGCATAG 2043 0.4356 MESNFTGADDLFAEDKGMPYLSDSLGFATMDPSPEDNNDFLETANFISHILTEENVEQRPFYDSLTLNRNPSTMLSPATYLFHPFNTLSFSVLKMKPPPAVATTATTIFQMKILFRRGLEEASKFLPPGPNLGRKNHEHEEIDTREEGRRSNKQSALSLVDETDLSDAFDRVLIHEGKQCDKHNCLQGGSVNVEERDRGKVRSKNQEGRKKETVDLRNLLLMCAQSVYANDSRTANELLKQIRQHSSAIGDASQRLVHYFANGLKTCLIGDGTGAQGMYFFLTSKKITAAEFLTTYLVFLSASPFKKFIHFFANKMIMKAAAKAETVHVIDFGILYGFQCPSLIKFLSNRESGPPKLRITGIEFPQPGFRPTERIEETGHCLANYCKHYNVPFEYNAIASKNRESIQVEALKIQSNELVAVNCHLRFENLLNESIEVNSPRNAVLHLIRKINQDIFTQSITNGSYNAPFFATRFREALFHYSATYELIDTVIPRENEWRLMIERELLGREIMNVIACEGSQRIERPETYKQWQILSWMKITTGCFKVGRATFCMLPLVGCQHNEMLLDWVQNSYYTEGFGILGLATSTCLTFRCCDEDCNKLCTKLLACERRPETYKQWQVRNMRAGFKQLPLDEHLINKLRCKLKDVYHSDLVLLEDGNYMLQVWKGRVVYASSCWVPA 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01253 680 MobiDBLite consensus disorder prediction 133 152 - -
Gma11g01253 680 ProSiteProfiles GRAS family profile. 207 678 IPR005202 -
Gma11g01253 680 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 131 534 - -
Gma11g01253 680 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 26 87 - -
Gma11g01253 680 MobiDBLite consensus disorder prediction 126 156 - -
Gma11g01253 680 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 131 534 IPR005202 -
Gma11g01253 680 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 611 679 IPR005202 -
Gma11g01253 680 Pfam GRAS domain family 610 677 IPR005202 -
Gma11g01253 680 Pfam GRAS domain family 216 533 IPR005202 -
Gma11g01253 680 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 26 87 IPR005202 -
Gma11g01253 680 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 611 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01253 Gma-Chr11 10677537 10680643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01253 606 679 GRAS Transcription Factor Family AT2G29060 47.500 6.10e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma11g01253 GRAS 3.4e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01253 - - gmx:100795855 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00551 12 4613052 4615756 Gma11g01253 11 10677537 10680643 GST
Gma13g03010 13 44582413 44584268 Gma11g01253 11 10677537 10680643 PCT
Gma15g00353 15 2995010 2996868 Gma11g01253 11 10677537 10680643 PCT
Gma11g01253 11 10677537 10680643 Gma13g03009 13 44572503 44574101 PCT
Gma11g01253 11 10677537 10680643 Gma15g00354 15 3005659 3007820 PCT