Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma11g01240 | ATGAATTTGGAAACGCAACCAGGAACGGCGTCGTATTGGTGCTACAGCTGCTCCCGTTTCGTGCACCTCTCTGTCCAAAGCACCATCGCCTGCCCCCACTGTCAAAGCGGTTTCGTCGAAGAGATCCGTGCCGGCGCCGGAGCCGAAGCCTCGCCACGCCATCGACTAAGTCCTTTCCCCGATGATCCTCTTTTGCTCCGGCGACAGGGCTTCCGCCGCCGTAGGAGAGAAGCTTCCGGCAACCGCTCCCCGTTCAACCCCGTTATCGTCCTCCGCGGCCCCGGCGACGACTCCGCCGCCGCCGACCACGACGGCGTCAGCACGTTCGAGCTCTTCTACGACGACGGCGACGGCACCGGCCTCCGCCCTCTTCCTCCCACCATGTCGGAGTTGCTCCTCGGCTCTGGCTTTGACAGACTTCTCGAACAGTTCGCGCAGATCGAGATGAACGGATTCGGGCGGCCGGAGAATCCGCCGGCGTCAAAGGCGGCGATCGAGTCCATGCCGACGGTCGAGATCGGAGAAACGCACGTGGAAACCGAAGCGCACTGCGCCGTGTGCAAAGAAGCGTTTGAGCTGCACGCGGAGGCGCGTGAGTTACCGTGCAAGCACATCTACCACTCCGATTGCATCCTCCCGTGGCTCTCGATGCGGAATTCGTGCCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGGGTTCCCAGCCAGATCGACGAGGAGACGATAGGGTTAACGATTTGGAGGCTTCCCGGCGGCGGATTCGCCGTGGGGAGATTCTCCGGCGGCCGGAGAACAGGCGAGAGTCATTTCCCGGTGGTGTACACGGAGATGGACGGTGGACTGAACACGAACGGTGGTGCTCCTAGGAGAATTTCTCGTTCTGTTAGAAGCAATAGGGTTAGGGAAAGTCGAGGGTTTGGTAGAGTTATTAGCAATTTCTTTTCATTCTTTGGAAGAATTGGTTCTAGAAACTCTTCTTCTGGACATGGGTCTGTAAGTAGAAGCCGTAGTCACGTGAGTTCAATCTTCAATAGAAGCTCGCGGAGACATAGCAGGACTTGGGTTATGGATGATTAA | 1086 | 0.581 | MNLETQPGTASYWCYSCSRFVHLSVQSTIACPHCQSGFVEEIRAGAGAEASPRHRLSPFPDDPLLLRRQGFRRRRREASGNRSPFNPVIVLRGPGDDSAAADHDGVSTFELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGETHVETEAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRVPSQIDEETIGLTIWRLPGGGFAVGRFSGGRRTGESHFPVVYTEMDGGLNTNGGAPRRISRSVRSNRVRESRGFGRVISNFFSFFGRIGSRNSSSGHGSVSRSRSHVSSIFNRSSRRHSRTWVMDD | 361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma11g01240 | 361 | SMART | ring_2 | 184 | 224 | IPR001841 | - | |
Gma11g01240 | 361 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 9 | 309 | - | - | |
Gma11g01240 | 361 | SUPERFAMILY | RING/U-box | 164 | 232 | - | - | |
Gma11g01240 | 361 | Pfam | zinc-ribbon | 11 | 42 | IPR039525 | GO:0061630 | |
Gma11g01240 | 361 | PANTHER | OS05G0110000 PROTEIN | 9 | 309 | - | - | |
Gma11g01240 | 361 | CDD | RING-H2_RNF126_like | 184 | 225 | - | - | |
Gma11g01240 | 361 | Pfam | Ring finger domain | 183 | 225 | IPR001841 | - | |
Gma11g01240 | 361 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 231 | IPR013083 | - | |
Gma11g01240 | 361 | Pfam | Protein of unknown function (DUF1117) | 245 | 351 | IPR010543 | - | |
Gma11g01240 | 361 | ProSiteProfiles | Zinc finger RING-type profile. | 184 | 225 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma11g01240 | Gma-Chr11 | 10580431 | 10582078 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma11g01240 | 123 | 231 | C3H Transcription Factor Family | AT5G01980 | 47.706 | 1.18e-27 | 111 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma11g01240 | - | - | gmx:100804867 | 654.44 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma11g01240 | 11 | 10580431 | 10582078 | Gma11g01240 | 11 | 10580431 | 10582078 | ECH | |
Gma11g01240 | 11 | 10580431 | 10582078 | Gma12g00539 | 12 | 4488518 | 4489603 | ECH | |
Gma07g01247 | 07 | 16266127 | 16267455 | Gma11g01240 | 11 | 10580431 | 10582078 | ECH | |
Gma12g00539 | 12 | 4488518 | 4489603 | Gma11g01240 | 11 | 10580431 | 10582078 | GST | |
Gma13g03020 | 13 | 44645690 | 44647209 | Gma11g01240 | 11 | 10580431 | 10582078 | PCT | |
Gma15g00342 | 15 | 2932848 | 2934331 | Gma11g01240 | 11 | 10580431 | 10582078 | PCT | |
Gma11g01240 | 11 | 10580431 | 10582078 | Gma13g03020 | 13 | 44645690 | 44647209 | PCT | |
Gma11g01240 | 11 | 10580431 | 10582078 | Gma15g00342 | 15 | 2932848 | 2934331 | PCT |