Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01240 ATGAATTTGGAAACGCAACCAGGAACGGCGTCGTATTGGTGCTACAGCTGCTCCCGTTTCGTGCACCTCTCTGTCCAAAGCACCATCGCCTGCCCCCACTGTCAAAGCGGTTTCGTCGAAGAGATCCGTGCCGGCGCCGGAGCCGAAGCCTCGCCACGCCATCGACTAAGTCCTTTCCCCGATGATCCTCTTTTGCTCCGGCGACAGGGCTTCCGCCGCCGTAGGAGAGAAGCTTCCGGCAACCGCTCCCCGTTCAACCCCGTTATCGTCCTCCGCGGCCCCGGCGACGACTCCGCCGCCGCCGACCACGACGGCGTCAGCACGTTCGAGCTCTTCTACGACGACGGCGACGGCACCGGCCTCCGCCCTCTTCCTCCCACCATGTCGGAGTTGCTCCTCGGCTCTGGCTTTGACAGACTTCTCGAACAGTTCGCGCAGATCGAGATGAACGGATTCGGGCGGCCGGAGAATCCGCCGGCGTCAAAGGCGGCGATCGAGTCCATGCCGACGGTCGAGATCGGAGAAACGCACGTGGAAACCGAAGCGCACTGCGCCGTGTGCAAAGAAGCGTTTGAGCTGCACGCGGAGGCGCGTGAGTTACCGTGCAAGCACATCTACCACTCCGATTGCATCCTCCCGTGGCTCTCGATGCGGAATTCGTGCCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGGGTTCCCAGCCAGATCGACGAGGAGACGATAGGGTTAACGATTTGGAGGCTTCCCGGCGGCGGATTCGCCGTGGGGAGATTCTCCGGCGGCCGGAGAACAGGCGAGAGTCATTTCCCGGTGGTGTACACGGAGATGGACGGTGGACTGAACACGAACGGTGGTGCTCCTAGGAGAATTTCTCGTTCTGTTAGAAGCAATAGGGTTAGGGAAAGTCGAGGGTTTGGTAGAGTTATTAGCAATTTCTTTTCATTCTTTGGAAGAATTGGTTCTAGAAACTCTTCTTCTGGACATGGGTCTGTAAGTAGAAGCCGTAGTCACGTGAGTTCAATCTTCAATAGAAGCTCGCGGAGACATAGCAGGACTTGGGTTATGGATGATTAA 1086 0.581 MNLETQPGTASYWCYSCSRFVHLSVQSTIACPHCQSGFVEEIRAGAGAEASPRHRLSPFPDDPLLLRRQGFRRRRREASGNRSPFNPVIVLRGPGDDSAAADHDGVSTFELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGETHVETEAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRVPSQIDEETIGLTIWRLPGGGFAVGRFSGGRRTGESHFPVVYTEMDGGLNTNGGAPRRISRSVRSNRVRESRGFGRVISNFFSFFGRIGSRNSSSGHGSVSRSRSHVSSIFNRSSRRHSRTWVMDD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01240 361 SMART ring_2 184 224 IPR001841 -
Gma11g01240 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 309 - -
Gma11g01240 361 SUPERFAMILY RING/U-box 164 232 - -
Gma11g01240 361 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Gma11g01240 361 PANTHER OS05G0110000 PROTEIN 9 309 - -
Gma11g01240 361 CDD RING-H2_RNF126_like 184 225 - -
Gma11g01240 361 Pfam Ring finger domain 183 225 IPR001841 -
Gma11g01240 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 231 IPR013083 -
Gma11g01240 361 Pfam Protein of unknown function (DUF1117) 245 351 IPR010543 -
Gma11g01240 361 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01240 Gma-Chr11 10580431 10582078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01240 123 231 C3H Transcription Factor Family AT5G01980 47.706 1.18e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01240 - - gmx:100804867 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01240 11 10580431 10582078 Gma11g01240 11 10580431 10582078 ECH
Gma11g01240 11 10580431 10582078 Gma12g00539 12 4488518 4489603 ECH
Gma07g01247 07 16266127 16267455 Gma11g01240 11 10580431 10582078 ECH
Gma12g00539 12 4488518 4489603 Gma11g01240 11 10580431 10582078 GST
Gma13g03020 13 44645690 44647209 Gma11g01240 11 10580431 10582078 PCT
Gma15g00342 15 2932848 2934331 Gma11g01240 11 10580431 10582078 PCT
Gma11g01240 11 10580431 10582078 Gma13g03020 13 44645690 44647209 PCT
Gma11g01240 11 10580431 10582078 Gma15g00342 15 2932848 2934331 PCT