Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01215 ATGGGTGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACCTCAAATCAAACCTTCACAACTTGTCTGATAATGATGATGATGGGAAAAGGAATGAGAAGGATCCTTGTGGAGGGTTCAGTGAGTACAGTTTGGATCAGTTAAGAGTTGCAACCTCAGGATTTTCACCAGACAACATTGTCTCAGAGCATGGAGAGAAGGCTCCAAACGTTGTCTACAGAGGGATGCTTGAAGATGATAGGTTGGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGATGAAGCACGTGCTGTGGGGCAGCTAAGGAGTGAAAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAAAGGTTGCTTGTGGCAGAGTTCATGCCCAATGAAACTCTCTCCAAACACCTTTTTCATTGGGAATCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCATTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAATAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAGGAAGGATCACTGCTGAAAGTGTAGTATACAGTTTTGGCACCCTATTGCTTGATCTGTTGAGTGGAAAGCATATCCCACCCAGTCATGCACTTGACCTTATACAAGGCAAAAATTTTCTGTTGCTGATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGGACTGAGTTAGTGAGATTAGCATCACGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGTTAAGTCACTTGTGACTGCTCTAACCCCCCTTCAGAAAGAAACTTCGGTACCATCAAATGTTTTAATGGGCATACCAGATAGGAGTCTATCATCAAAGGAAACAGTTTCATTGACGCCTTTTGGTGATGCTTGTTCAAGAAGAGATCTGACTGCAATACATGAAATTTTGGAAAACGTAGGCTACAAAGATGATGAAGGTGTTGCAAATGAGCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAAAAGCTAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCCACGGCCATTGACTGCTATACACAATTCATCGATGGTGGAACCATGGTATCACCGACTGTGTATGCCAGGCGCTGCTTGTGCTACCTGATGAATGACATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAATCAATATCTCCCACTTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGCCTTAAAGATGGCACAACACTGGAAACCAGGAAGTATAGAAATTGA 1479 0.4375 MGARCSKFSLCWWPSHLKSNLHNLSDNDDDGKRNEKDPCGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYRGMLEDDRLVAVKRFNKSAWPDSRQFLDEARAVGQLRSERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWESQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEANPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIQGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETSVPSNVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAIHEILENVGYKDDEGVANELSFQMWTNQIQETLNSKKLGDSAFHARDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQEALGDAMQAQSISPTWPTAYYLQAAALFSLGMDNDAQESLKDGTTLETRKYRN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01215 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 492 IPR045845 GO:0004672|GO:0009742
Gma11g01215 492 SUPERFAMILY TPR-like 391 482 IPR011990 GO:0005515
Gma11g01215 492 Gene3D Tetratricopeptide repeat domain 385 491 IPR011990 GO:0005515
Gma11g01215 492 SUPERFAMILY Protein kinase-like (PK-like) 41 317 IPR011009 -
Gma11g01215 492 ProSiteProfiles Protein kinase domain profile. 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g01215 492 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Gma11g01215 492 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672|GO:0006468
Gma11g01215 492 Gene3D Transferase(Phosphotransferase) domain 1 137 329 - -
Gma11g01215 492 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01215 Gma-Chr11 10377554 10381686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01215 41 316 Receptor kinase-like Gene Family AT3G58690 32.890 4.97e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gma11g01215 PK_Tyr_Ser-Thr 6.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01215 - - gmx:732542 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01215 11 10377554 10381686 Gma11g01215 11 10377554 10381686 ECH
Gma12g00515 12 4305025 4309153 Gma11g01215 11 10377554 10381686 GST