Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01213 ATGAGGAAGCCCGAGGTTTCTGGAAAAAACAACAACATTAATAACAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCGGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACCACAAGAAGAGGAAATCATCATCCATTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCAGCGCGCTTACCAGGGAGAACTGACAATGAAATTAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACTTGTCCTCCAACACCTCACCAAATGGAAGCGAGTCATCATATGAGCCCAACAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCAACAAAATCAACAACATGCTGATTTTATGCCTATGTTCAATTCATCATCTCAATCACCATCCATGCATGCCACTACAGTTCTCAATTCCATAATTGACAGGTTGCCTATGCTAGAGCATGGACTAAACATGACAAGTTCTGGTGGATTCTTCAACAGCAAAGGGCCATGCTTCTCATCATCACAAAGTGGAGTTGACAACAACAAAGGGTTTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGTGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATTATAACCTGAAATTGGAGAGTACGTGCAACACAGATACTAACAATAGTAATTACTTTGATGACATAAACAGTATCATCCTTAATAACTGCAACATTAATAATAGCAACAATATTAAGAGAGCTGAAAATAGGGCTGGTGGGGTGGAGAATTTGTTTCAAGAAGAGTTAACCATTGGAGAGTGGGACTTAGAGGAGTTGATGAAAGATGTTTCATCCTTTCCGTTTCTTGATTTTTCAAAAATCCAATAA 1023 0.4008 MRKPEVSGKNNNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEIIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSNTSPNGSESSYEPNNKDLNMAGFTTSNTQQNQQHADFMPMFNSSSQSPSMHATTVLNSIIDRLPMLEHGLNMTSSGGFFNSKGPCFSSSQSGVDNNKGFYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHYNLKLESTCNTDTNNSNYFDDINSIILNNCNINNSNNIKRAENRAGGVENLFQEELTIGEWDLEELMKDVSSFPFLDFSKIQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01213 340 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gma11g01213 340 CDD SANT 22 66 IPR001005 -
Gma11g01213 340 PANTHER MYB DOMAIN PROTEIN 55 8 337 - -
Gma11g01213 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Gma11g01213 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Gma11g01213 340 SMART sant 71 119 IPR001005 -
Gma11g01213 340 SMART sant 18 68 IPR001005 -
Gma11g01213 340 Gene3D - 74 146 - -
Gma11g01213 340 Gene3D - 16 72 - -
Gma11g01213 340 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Gma11g01213 340 MobiDBLite consensus disorder prediction 123 149 - -
Gma11g01213 340 CDD SANT 74 114 IPR001005 -
Gma11g01213 340 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Gma11g01213 340 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Gma11g01213 340 PANTHER MYB TRANSCRIPTION FACTOR 8 337 - -
Gma11g01213 340 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01213 Gma-Chr11 10354576 10357168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01213 1 336 MYB Transcription Factor Family AT3G08500 42.623 1.36e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma11g01213 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01213 K09422 - gmx:100785810 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01213 11 10354576 10357168 Gma11g01213 11 10354576 10357168 ECH
Gma11g01213 11 10354576 10357168 Gma12g00513 12 4288357 4290528 ECH
Gma12g00513 12 4288357 4290528 Gma11g01213 11 10354576 10357168 GST
Gma15g00326 15 2824709 2827357 Gma11g01213 11 10354576 10357168 PCT
Gma11g01213 11 10354576 10357168 Gma15g00326 15 2824709 2827357 PCT