Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01205 ATGACCAATTCCTACACCTCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTcttctctcttctccttctccttctccttcCATCAATCCACCATTCTATTTTCCTTCAAATTATCATAATAATAACTACACAAGTGTCATATCTTCTACTCGTCATCAGTTCCAACCCTCTCCTCCTCCTGAAGGAAAAGCCCTTCCCCTCCTTCATCCAAGACATGAAGTAGAAGAAGAAGATCTTGAATCTTCATTCAGTGCCATGGAAGTGGACAAGAAAAAGAAAGAGCTGAGTTCATCATCTAGCTGCTTGGATGAAGAAGATGCTGCAGTGACTGTGGCCTTACACTTAGGGCTTCCAAGCACGAGTGATTTAGCTTCTTCAAGCCTATACTCATCAACAGAGGCCTCTTCAGACAAAGAAGAAGAAGAAGAAGAAGTAGTACTCACTGATTCTTCGGGGCTTCTTCTGTCAAATAGAATTAACAGAGGACAATATTGGATCCCTACTTCCTCACAGATTCTGATTGGTCCAACACAGTTCCCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCAATGCTAAGACTCCCTTGCTATTGCTGTGCACCTGGATGCAAGAACAACATAGACCATCCAAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACTCACTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGAACTCACGAAAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGATCTGATTTTAAACACAAAAGATCTCTTAAGGATCATATCAAGGCATTTGGATATGGTCACACGGCTTGTGGAAATGATCGCTGCAACCTTGATCAAGATCATGATGATCAATTAGTGGGCTCTGAAATTGAATAA 1026 0.4142 MTNSYTSNDLNFWLDLNSPCLLSSPSPSPSINPPFYFPSNYHNNNYTSVISSTRHQFQPSPPPEGKALPLLHPRHEVEEEDLESSFSAMEVDKKKKELSSSSSCLDEEDAAVTVALHLGLPSTSDLASSSLYSSTEASSDKEEEEEEVVLTDSSGLLLSNRINRGQYWIPTSSQILIGPTQFPCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTACGNDRCNLDQDHDDQLVGSEIE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01205 341 Gene3D Classic Zinc Finger 181 204 - -
Gma11g01205 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Gma11g01205 341 MobiDBLite consensus disorder prediction 125 147 - -
Gma11g01205 341 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Gma11g01205 341 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 6 329 - -
Gma11g01205 341 Gene3D Classic Zinc Finger 243 324 - -
Gma11g01205 341 PANTHER ZINC FINGER PROTEIN WIP2 6 329 IPR043584 GO:0003700|GO:0010468
Gma11g01205 341 SUPERFAMILY beta-beta-alpha zinc fingers 248 286 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01205 Gma-Chr11 10282018 10284511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01205 1 341 C2H2 Transcription Factor Family AT1G51220 56.980 5.45e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g01205 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01205 - - gmx:100783143 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00506 12 4224816 4227306 Gma11g01205 11 10282018 10284511 GST
Gma13g03043 13 44817029 44819284 Gma11g01205 11 10282018 10284511 PCT
Gma15g00318 15 2744930 2747071 Gma11g01205 11 10282018 10284511 PCT
Gma11g01205 11 10282018 10284511 Gma13g03043 13 44817029 44819284 PCT
Gma11g01205 11 10282018 10284511 Gma15g00318 15 2744930 2747071 PCT