Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01191 ATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCACCAGCAGCAGATGAATTCAGGGTTGACACGTTACCGATCGGCGCCAAGTTCGTATTTTTCGAGCATCATTGACCATGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAGCGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGTGATGCTGATGCAGAGGATTCACTTGCTACTACTCAGAATCCCCCAACTGTTGTTGCGGTTAAGGAAGAGGTTAATCAGCAACCTCCGGATGTTACATCCATGAATAATGAACcacttgttctccaacaacaacagcagcagcagcaacaacaacaacaaagtaataatatgtataaTTATGGCTCTTCTGGTACTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAAACCAGATGAAGACTGGTCATGGAAGTAGTTCTAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGATATTACTGGCTATGCTGCTGTTGTAAGGGGCATGGGAACTATGGGAGCTGCTGCTAATAACACCAGCGAGGAAGCAAACTTTTCACCAGCAACAAGGATGAAGAATAATGCaccaaacttctcttcaggactaatgtcatcaagggctgaagttggaaacaagagcaatacacagaacaataatgcagaaaatgaagggtttgctgaaagccagggcaatgagtttatccctgcaggtttccccgttggtccgtggaatgattctgcaatcatgtctgacaacgtgacaggtctgaagagatttagagatgaagatgtgaaaccattttctggtggtttaaatgcacctgaaagtcagaatgaaactggaggccAACAACCTTCTTCTTCTGCTTTGGCTCATCAATTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTGCAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAACGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAGCTACAAGATCTCGTTCCCAACATGGATAAGCAAACAAACACAGCTGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTCAGACTCTTTCGGACAATCGGGCAAAGTGTACGTGTTCACACAAGAAGCAGCAATAA 1257 0.3325 MESDLQQHPPMFLDHHQQQMNSGLTRYRSAPSSYFSSIIDHEFYEHVFNRPSSPETERMLTRFVNSLGGGDADAEDSLATTQNPPTVVAVKEEVNQQPPDVTSMNNEPLVLQQQQQQQQQQQQSNNMYNYGSSGTQNFYQSTGRPPLPNQMKTGHGSSSNLIRHGSSPAGLFSNINIDITGYAAVVRGMGTMGAAANNTSEEANFSPATRMKNNAPNFSSGLMSSRAEVGNKSNTQNNNAENEGFAESQGNEFIPAGFPVGPWNDSAIMSDNVTGLKRFRDEDVKPFSGGLNAPESQNETGGQQPSSSALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQNQVQTLSDNRAKCTCSHKKQQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01191 418 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Gma11g01191 418 MobiDBLite consensus disorder prediction 203 246 - -
Gma11g01191 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 408 IPR036638 GO:0046983
Gma11g01191 418 SMART finulus 352 402 IPR011598 GO:0046983
Gma11g01191 418 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 415 - -
Gma11g01191 418 MobiDBLite consensus disorder prediction 284 311 - -
Gma11g01191 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 396 IPR011598 GO:0046983
Gma11g01191 418 Gene3D - 347 418 IPR036638 GO:0046983
Gma11g01191 418 Coils Coil 386 406 - -
Gma11g01191 418 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 415 - -
Gma11g01191 418 MobiDBLite consensus disorder prediction 291 311 - -
Gma11g01191 418 MobiDBLite consensus disorder prediction 109 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01191 Gma-Chr11 10138137 10142740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01191 1 413 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.981 4.27e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma11g01191 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01191 - - gmx:100789855 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01191 11 10138137 10142740 Gma11g01191 11 10138137 10142740 ECH
Gma11g01191 11 10138137 10142740 Gma12g00492 12 4087312 4092196 ECH
Gma03g01302 03 39201065 39204811 Gma11g01191 11 10138137 10142740 ECH
Gma19g01359 19 42912228 42915776 Gma11g01191 11 10138137 10142740 ECH
Gma10g00858 10 13400181 13403280 Gma11g01191 11 10138137 10142740 ECH
Gma12g00492 12 4087312 4092196 Gma11g01191 11 10138137 10142740 GST