Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01178 ATGGAGTCAGAGGATGATATGCACGACGCCAACGACATCGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCTTTGGACTACTACAGCGACGACGACGCCGACGATTACTTCGACGACGCCGAGAGGATCGAGTCTCGCCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCCGATATCCGACTAAGACAGGAAGATGACGTCGCTAGAGTAGCAACGGTTCTTTCCATATCAAGGGTTTCTGCAAGCTTACTACTCCGTCACCACAATTGGAGCGTCAGTAGAGTGCATGATACATGGTTTGCTGATGAAGAACGAGTTCGAAAAGCAGTTGGCTTGTTGGAGAAGCCAATTGTCCAGCATCCTAATGCTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCCTGTGGGCATCCCTATTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCGGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTATTGGTCAAGATATGATTAATCTTTTAGTGTCTGATGAAGATAAGCAGAAATATGCACGTTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGCTGGAAATTATGATGTCTCTTGCTTCTGTTCATATGGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGCCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCTGAGTCTGAAAACATGAATTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACATGCACTCCGCCCTGTAAATTTGAATTTTGCTGGCTATGTGTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCTCAGCTTAAGTTCATAACTGAAGCCTGGCTACAAATAATTGAGTGTAGAAGAGTGCTGAAATGGACATATGCATATGGGTTTTATTTGCCGGAGCATGAGCATGCAAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCGGAAAAGGAACTACAGCCGTTCCTAAGTGCTGATGATCCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTATCTGATGTGGGAAGTAATGGAGCTGCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGTAGCAGTAAGGGTAGAGCTGGAAGAGGAAAGGGAACTTTTCGAACTAGCTTGTCCAGCAAATTGAATGATGATAGTCATTGGTATTGTGAGCATTGTACCTATGCAAATGTCAAATCTGCCTCCACATGCCAGATGTGCTATCAACAACGTCGATGA 1761 0.4401 MESEDDMHDANDIESLDDDFYSGETEDAPLDYYSDDDADDYFDDAERIESRRPEQNFTILKESDIRLRQEDDVARVATVLSISRVSASLLLRHHNWSVSRVHDTWFADEERVRKAVGLLEKPIVQHPNARELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCGAAIGQDMINLLVSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSAGNYDVSCFCSYGFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADDPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVGSNGAAFSKATSSKNAAGSSKGRAGRGKGTFRTSLSSKLNDDSHWYCEHCTYANVKSASTCQMCYQQRR 586
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01178 586 ProSiteProfiles Zinc finger RanBP2 type profile. 558 586 IPR001876 -
Gma11g01178 586 SUPERFAMILY Ran binding protein zinc finger-like 558 585 IPR036443 -
Gma11g01178 586 SUPERFAMILY RING/U-box 285 333 - -
Gma11g01178 586 SMART ibrneu5 270 340 IPR002867 -
Gma11g01178 586 SMART ibrneu5 203 266 IPR002867 -
Gma11g01178 586 CDD RING-HC_RBR_TRIAD1_like 134 184 - -
Gma11g01178 586 Gene3D - 556 586 - -
Gma11g01178 586 ProSiteProfiles TRIAD supradomain profile. 130 344 IPR044066 -
Gma11g01178 586 ProSiteProfiles Zinc finger RING-type profile. 134 178 IPR001841 -
Gma11g01178 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 534 IPR031127 GO:0004842|GO:0016567
Gma11g01178 586 Pfam Ariadne domain 353 514 IPR045840 -
Gma11g01178 586 SMART zf_4 560 584 IPR001876 -
Gma11g01178 586 ProSitePatterns Zinc finger RanBP2-type signature. 562 581 IPR001876 -
Gma11g01178 586 Gene3D - 262 517 - -
Gma11g01178 586 SUPERFAMILY RING/U-box 130 215 - -
Gma11g01178 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 214 IPR013083 -
Gma11g01178 586 MobiDBLite consensus disorder prediction 528 549 - -
Gma11g01178 586 Pfam IBR domain, a half RING-finger domain 283 331 IPR002867 -
Gma11g01178 586 Pfam IBR domain, a half RING-finger domain 203 266 IPR002867 -
Gma11g01178 586 SUPERFAMILY RING/U-box 204 273 - -
Gma11g01178 586 MobiDBLite consensus disorder prediction 1 39 - -
Gma11g01178 586 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 534 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma11g01178 Gma-Chr11 9923763 9931868 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01178 17 585 ARIADNE family AT1G65430 69.775 0.0 842
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01178 K11968 - gmx:100784195 1200.65
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01178 11 9923763 9931868 Gma11g01178 11 9923763 9931868 ECH
Gma12g00480 12 3906571 3914025 Gma11g01178 11 9923763 9931868 GST
Gma13g03065 13 45011289 45020024 Gma11g01178 11 9923763 9931868 PCT
Gma15g00296 15 2556925 2564258 Gma11g01178 11 9923763 9931868 PCT
Gma11g01178 11 9923763 9931868 Gma13g03065 13 45011289 45020024 PCT
Gma11g01178 11 9923763 9931868 Gma15g00296 15 2556925 2564258 PCT