Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma11g01178 | ATGGAGTCAGAGGATGATATGCACGACGCCAACGACATCGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCTTTGGACTACTACAGCGACGACGACGCCGACGATTACTTCGACGACGCCGAGAGGATCGAGTCTCGCCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCCGATATCCGACTAAGACAGGAAGATGACGTCGCTAGAGTAGCAACGGTTCTTTCCATATCAAGGGTTTCTGCAAGCTTACTACTCCGTCACCACAATTGGAGCGTCAGTAGAGTGCATGATACATGGTTTGCTGATGAAGAACGAGTTCGAAAAGCAGTTGGCTTGTTGGAGAAGCCAATTGTCCAGCATCCTAATGCTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCCTGTGGGCATCCCTATTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCGGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTATTGGTCAAGATATGATTAATCTTTTAGTGTCTGATGAAGATAAGCAGAAATATGCACGTTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGCTGGAAATTATGATGTCTCTTGCTTCTGTTCATATGGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGCCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCTGAGTCTGAAAACATGAATTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACATGCACTCCGCCCTGTAAATTTGAATTTTGCTGGCTATGTGTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCGCTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCTCAGCTTAAGTTCATAACTGAAGCCTGGCTACAAATAATTGAGTGTAGAAGAGTGCTGAAATGGACATATGCATATGGGTTTTATTTGCCGGAGCATGAGCATGCAAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCGGAAAAGGAACTACAGCCGTTCCTAAGTGCTGATGATCCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTCTATCTGATGTGGGAAGTAATGGAGCTGCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGTAGCAGTAAGGGTAGAGCTGGAAGAGGAAAGGGAACTTTTCGAACTAGCTTGTCCAGCAAATTGAATGATGATAGTCATTGGTATTGTGAGCATTGTACCTATGCAAATGTCAAATCTGCCTCCACATGCCAGATGTGCTATCAACAACGTCGATGA | 1761 | 0.4401 | MESEDDMHDANDIESLDDDFYSGETEDAPLDYYSDDDADDYFDDAERIESRRPEQNFTILKESDIRLRQEDDVARVATVLSISRVSASLLLRHHNWSVSRVHDTWFADEERVRKAVGLLEKPIVQHPNARELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCGAAIGQDMINLLVSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSAGNYDVSCFCSYGFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADDPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVGSNGAAFSKATSSKNAAGSSKGRAGRGKGTFRTSLSSKLNDDSHWYCEHCTYANVKSASTCQMCYQQRR | 586 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma11g01178 | 586 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 558 | 586 | IPR001876 | - | |
| Gma11g01178 | 586 | SUPERFAMILY | Ran binding protein zinc finger-like | 558 | 585 | IPR036443 | - | |
| Gma11g01178 | 586 | SUPERFAMILY | RING/U-box | 285 | 333 | - | - | |
| Gma11g01178 | 586 | SMART | ibrneu5 | 270 | 340 | IPR002867 | - | |
| Gma11g01178 | 586 | SMART | ibrneu5 | 203 | 266 | IPR002867 | - | |
| Gma11g01178 | 586 | CDD | RING-HC_RBR_TRIAD1_like | 134 | 184 | - | - | |
| Gma11g01178 | 586 | Gene3D | - | 556 | 586 | - | - | |
| Gma11g01178 | 586 | ProSiteProfiles | TRIAD supradomain profile. | 130 | 344 | IPR044066 | - | |
| Gma11g01178 | 586 | ProSiteProfiles | Zinc finger RING-type profile. | 134 | 178 | IPR001841 | - | |
| Gma11g01178 | 586 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 15 | 534 | IPR031127 | GO:0004842|GO:0016567 | |
| Gma11g01178 | 586 | Pfam | Ariadne domain | 353 | 514 | IPR045840 | - | |
| Gma11g01178 | 586 | SMART | zf_4 | 560 | 584 | IPR001876 | - | |
| Gma11g01178 | 586 | ProSitePatterns | Zinc finger RanBP2-type signature. | 562 | 581 | IPR001876 | - | |
| Gma11g01178 | 586 | Gene3D | - | 262 | 517 | - | - | |
| Gma11g01178 | 586 | SUPERFAMILY | RING/U-box | 130 | 215 | - | - | |
| Gma11g01178 | 586 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 214 | IPR013083 | - | |
| Gma11g01178 | 586 | MobiDBLite | consensus disorder prediction | 528 | 549 | - | - | |
| Gma11g01178 | 586 | Pfam | IBR domain, a half RING-finger domain | 283 | 331 | IPR002867 | - | |
| Gma11g01178 | 586 | Pfam | IBR domain, a half RING-finger domain | 203 | 266 | IPR002867 | - | |
| Gma11g01178 | 586 | SUPERFAMILY | RING/U-box | 204 | 273 | - | - | |
| Gma11g01178 | 586 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Gma11g01178 | 586 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 15 | 534 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma11g01178 | Gma-Chr11 | 9923763 | 9931868 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma11g01178 | 17 | 585 | ARIADNE family | AT1G65430 | 69.775 | 0.0 | 842 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma11g01178 | K11968 | - | gmx:100784195 | 1200.65 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma11g01178 | 11 | 9923763 | 9931868 | Gma11g01178 | 11 | 9923763 | 9931868 | ECH | |
| Gma12g00480 | 12 | 3906571 | 3914025 | Gma11g01178 | 11 | 9923763 | 9931868 | GST | |
| Gma13g03065 | 13 | 45011289 | 45020024 | Gma11g01178 | 11 | 9923763 | 9931868 | PCT | |
| Gma15g00296 | 15 | 2556925 | 2564258 | Gma11g01178 | 11 | 9923763 | 9931868 | PCT | |
| Gma11g01178 | 11 | 9923763 | 9931868 | Gma13g03065 | 13 | 45011289 | 45020024 | PCT | |
| Gma11g01178 | 11 | 9923763 | 9931868 | Gma15g00296 | 15 | 2556925 | 2564258 | PCT |