Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01172 ATGTATCCAAAACAGTCAGGCCAAGATGGCCCTGATTCCAGACAGGTACGCTCAAGTGATAGGATCAAGACAAGGCCAAACGTTTATGGCCGGCCATATTTGTATTACAACCAAAATCATAGGCACACCAGGAAAAGCAAGATCAAGACAAGGACAGCAGCTTCACAGATTGCTAAGATGTTGCGTCCAGGGAATCGAAAATCAAAAGATTCTAATACTAATTCTGGCTCTGCCAACCTTCGACGTTCAACAAGGAAGAGAAGGCTTAATGTAAATCTTGAAGATTTTACAGACAGCTCTGGAGCTCAAGATGAAGACTTAATGAGACCACCTACATATTCATCATTGAGAAACCGGATGAAAAATAGTGTCAGACGGGATGGTTTGATGTCTAATAAGCGCAAAAGAGCAGCGGAGACTAAACAAACACCTCGACGTGAAGGTCTACGTCCTCGCCGTTCAAAGGGTGCTGCAATAGAACGATTAATTTTAGAATCAGATGATGAGCAAGACCTTTCAGAGGAAAAGGTTGATGAGGATGAAACAGAAAATGGAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGACGCTGAGGAGgaagatgaagatgaggacgaaggtgatgaagatggtgatgatgaagagggtgaagaagaGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTTCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGGCCCGGCCAAGATCTCCAAGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAACAGAGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCGAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGCCAAGCTATTCCATGGGGGCGAGGTGGCAACAGATCTGGTCCGCCTTGGCTATTTGGGGGCTTAGAGATGCATGGAACAACAGCTTTTGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTGTGGCTACTCTAACTTCGGGGATTCAAACTGCTGGACCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGAGAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTTAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTATTGTTATGTGGGCCCCCTGGCACAGGGAAAACGTTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCTAAAGCAGGCCAGAAGGTTAGCTTTTATATGCGCAAAGGAGCAGATGTGTTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTTTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCTACTTTGCTTGCTTTGATGGATGGCCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACTAACAGGATTGATGCTATTGATGGAGCCTTACGGCGCCCTGGTAGATTTGACCGTGAGTTTAACTTTCCTCTGCCTGGTTGTGAGGCACGTGGTGAGATATTAGACATTCACACTCGTAAGTGGAAGCATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGACCTGAAGGCTCTTTGTACTGAAGCTGCCATCCGTGCATTCCGTCAAAAATATCCACAGGTTTATACTAGTGATGACAAATTTGTCATTGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCCATGTCTACCATTACTCCTGCTGCTCATAGGGGAGCTATTGTGTACTCTAGGCCTTTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATTTAGAGAAAGCCATGTGTAGTATATCTGATATTTTCCCTCCAGCTTCAATTACATCAGAGTTGACCAAACTTTCGATGCTCTCCTACGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTCTGCTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAATTTCCCGTACATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGACACCAGAGGAGGCATTGGTACATATATTTGGTGAATCTAGAAGAACAACACCATCAATTCTCTATTTACCACAATTTGATGTTTGGTGGGAGACTGCTCATGAACAGCTCCGGGCTGTTCTCCTGACTTTGCTAGAAGAATTACCATCTGACTTGCCTATCTTACTGCTTGGTACATCCTCAGTTGCACTTTCTGAAGTTGAGGAAGTGCCTACTTCCATTTTCCCTCATCGCTCAGTTTATGAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATGTTTTGATAGAAGCTGCTATGTCAATATTGTTGGAGGGAATCAACAAGAAATCTCAAGACACCGGATGTCTCCCAGAACTTCCCAAGGCACCGAAATTGGCTAGTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGTAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATTCTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTGACAGATGAAGATGCACCAAATTATCGTTCAATTATACAGAACCCAATGGACGTGGCTACCATCCTGCATCATGTTGATAATGGTGACTATATTACAAGTGCTGCATTCCTGCAGGACATCAATCTCATTCATGTCCTATGTTTGATCCTTCTTTCTGCAACTCAGGCTTACAATGGAGAGGACTACAATGGTGCTAGGATTGTTAGTAGAGCTTGCGAGCTCCGTGATGCGGTGCATGGGATGCTCTCACAGATGGATCCAGCACTGGTTGCATATTGTGAAAAGATTGCTAGCCAAGGTGGCCCAGTTCAGTTGTCTGATGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTGCTGCTGGGTCAAAGTACTAGAATGAGTGCTCGACTTCGCCATGTCCAACCAGAAGTTAATATGAATCAGAGTTACGAAGTATTGAAGCGAACTAAGAAGATCGCTGAAGTGCATGCAGAAGACAAGTCACAAGAAGATTCGGTACCCCCAAAGTCTTCCCAGGAGCATCAAGCCAATGACACAAATTCTGAAAGGCTGGAAAATGTGTCAATTGAAGGAGATTTGCATGGAACTTGTACAAATAACCTTGCTGATGGCAACAGTCCTGATGATGTCACAATGCTAGATGGTGAATTTTCAGGAGAAGTAGAGTCTGTCAAGCAGCTTTTTGTGAAGCGTAGTGAAAATTACAGCATTCCACAACTTGAAAGGCTTTACACGAGAGTTATGAAGGGCGTGTTTGAAACCAAAAATAAAGGAGTGAATGGGGATCTTAAGTCTTCGGTTTTGAAGTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3609 0.4309 MYPKQSGQDGPDSRQVRSSDRIKTRPNVYGRPYLYYNQNHRHTRKSKIKTRTAASQIAKMLRPGNRKSKDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAQDEDLMRPPTYSSLRNRMKNSVRRDGLMSNKRKRAAETKQTPRREGLRPRRSKGAAIERLILESDDEQDLSEEKVDEDETENGNDADDGQNEIEGDAEEEDEDEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEEGKARPRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGQAIPWGRGGNRSGPPWLFGGLEMHGTTAFGLNLAASGWGHQGDAVATLTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARGEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVYSRPLSLVVQPCLQRHLEKAMCSISDIFPPASITSELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGESRRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALSEVEEVPTSIFPHRSVYEVNMPCAKDRTLFFNVLIEAAMSILLEGINKKSQDTGCLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVTDEDAPNYRSIIQNPMDVATILHHVDNGDYITSAAFLQDINLIHVLCLILLSATQAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCEKIASQGGPVQLSDELGDSTFPATPVVLLGQSTRMSARLRHVQPEVNMNQSYEVLKRTKKIAEVHAEDKSQEDSVPPKSSQEHQANDTNSERLENVSIEGDLHGTCTNNLADGNSPDDVTMLDGEFSGEVESVKQLFVKRSENYSIPQLERLYTRVMKGVFETKNKGVNGDLKSSVLKFLLNFVEDDANF 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01172 1202 MobiDBLite consensus disorder prediction 167 219 - -
Gma11g01172 1202 CDD AAA 408 547 - -
Gma11g01172 1202 Gene3D - 370 640 IPR027417 -
Gma11g01172 1202 ProSitePatterns AAA-protein family signature. 517 535 IPR003960 GO:0005524|GO:0016887
Gma11g01172 1202 Pfam AAA+ lid domain 574 611 IPR041569 -
Gma11g01172 1202 SMART bromo_6 892 1006 IPR001487 GO:0005515
Gma11g01172 1202 MobiDBLite consensus disorder prediction 220 250 - -
Gma11g01172 1202 PANTHER AAA DOMAIN-CONTAINING 1 1197 IPR045199 -
Gma11g01172 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 637 IPR027417 -
Gma11g01172 1202 MobiDBLite consensus disorder prediction 120 166 - -
Gma11g01172 1202 ProSiteProfiles Bromodomain profile. 915 962 IPR001487 GO:0005515
Gma11g01172 1202 SUPERFAMILY Bromodomain 890 1015 IPR036427 GO:0005515
Gma11g01172 1202 SMART AAA_5 408 549 IPR003593 -
Gma11g01172 1202 MobiDBLite consensus disorder prediction 1076 1105 - -
Gma11g01172 1202 MobiDBLite consensus disorder prediction 1 287 - -
Gma11g01172 1202 CDD Bromo_AAA 892 1009 - -
Gma11g01172 1202 Pfam ATPase family associated with various cellular activities (AAA) 412 547 IPR003959 GO:0005524|GO:0016887
Gma11g01172 1202 Gene3D - 548 633 - -
Gma11g01172 1202 Pfam Bromodomain 905 962 IPR001487 GO:0005515
Gma11g01172 1202 Gene3D - 884 1019 IPR036427 GO:0005515
Gma11g01172 1202 PANTHER BNAC08G44480D PROTEIN 1 1197 - -
Gma11g01172 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 925 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01172 Gma-Chr11 9875740 9882983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01172 358 612 Calmodulin-binding Proteins AT3G56690 37.066 3.93e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01172 K22531 - gmx:100783127 2279.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01172 11 9875740 9882983 Gma11g01172 11 9875740 9882983 ECH
Gma12g00473 12 3866771 3873446 Gma11g01172 11 9875740 9882983 GST