Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01155 ATGCCGCTTCCGGCGAAACCGATGAGGGATTTCGACGAGTCGGCTCCTCCGTCGAACAATCTGTGGGTGGGGAATCTGGCGGCGGACGTCACCGACGCCGATCTGATGGAGCTCTTCGCCAAATACGGCGCACTCGACAGCGTGACGTCATACTCCGCTCGCAGTTACGCGTTCGTGTTCTTCAAGCGCGTCGAAGACGCCAAAGCCGCTAAGAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAATTTGCCAGACCGGCAAAGGCTTGTAAACAACTTTGGGTGGGTGGTATTAGCCAAGCTGTTACAAAGGAAGATTTGGAAGCTGAATTTCATAAATTTGGTACAATTGAGGATTTTAAGTTCTTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTTGTCAGGCTATGAAAATCATGAATGGGAAACGAATTGGTGGGGAGCATATTCGTGTTGACTTCCTTCGTTCACAATCTACAAAAAGGGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAACTTGGGGCCTACTGATGCTTATTCTGGACAGAAAAGACCACTGCATTCACAGCCTCCAATGGGGAGAAAAGGCGACAGTCAACCAAGTAATATTTTGTGGATTGGTTATCCGCCTGCTGTTCAGATTGATGAACAAATGCTTCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTCCCTTCGAGAAATTATTCTATTGTTGAGTTTAGAAGTGTTGACGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAACGATCCTCGAATAACAATTATGTATTCCATCAGTGACCTAGTACCTGGCAGTGATTACCCTGGCTTTTTTCCTGGAAGTAATGGACCGAAACCTGATGTATTGCTGAATGACCATCCATTTCGACCATTACAAATGGATGCATTTGGTCATAATCGTCCAATGGGTCCAAATAATTTTCCTGGACAGTTACCACCTAGTGGTATTATGGGACCAAACATACCAATGCGACCTTTTGGTCCTCACAGTGGTGTTGAATCTGTTATTTCTGGCCCTGAGTTTAATGAGATTAATGCGCTCCACAAATTTCAGGATGGTAGCTCCAAGAGTAGCATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCGGGTGCTAGGCTTCCTACAAGATCAACCTCGGGTGCATGGGATGTGCTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCCTTGCCTGTTGATGAAGGCCCATTTCCTTTGAGGAATATAGATGATCGGGGGTTAGCTCTAGAGCAGACATATGGGATTGACCCAGCTATTGATGGAGGTGGTTCTGGTCCATATGTAAACATTCAAGGAAAGAGTCACCTTGGTCCAGTTAGCTCAAGGATTACAGCTGGAGTACATGGTGTCGCCCAACCTGATATTGATCATATTTGGCGTGGAGTTATTGCAAAAGGGGGAACTCCTGTTTGCCGTGCTAGATGTGTACCAATTGGGAAAGGAATTGGGACTGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGACGATTTTGCTTCATATACCGAGTTCCTTCGCTATCTTAGTGCGAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCTTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTCACTGGACCTGAGCGTCTGTATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCTATGCAACAACCATCACATTTGCGTGTACCAACTACTCAGTATATGCAGCAGATTCCTCCTTCGCAGACTGAATATGGTTTGATTCCTGTAAAAGAGGAACATATTTTACCAATGGATTATAACAGACCGTTGCATGAGGATTCCAAGCTTCCTGCTAAACCAGTCTATCCACCAACAGGTGGCCCCCCTCCAGTTCATTCTGGGCCTCCAGATTATGCTCCTAATAATACTGTTGCTGGGTCCCAAGCTGGAGTTGCATTAACACCTGAGCTAATTGCAACTTTAGCTTCTTTTCTTCCTACAACTACACAATCACCTGCCACTGATGGTGCCAAGTCAGCTGTAGGTTCCTCGACCATGAAGCCTCCATTTCCTCCCATGACACCAAATGATGGAAATCAATCTCATTTATGGAAACAGGATAATCAAATTGCAGATCAATCCACTCATCCTCCTCAACAGTTGAGGAGCATGTATAACATTCACAATGCTCACTATCAGCCCTATCCACCAGCATCTGCTCCTTCTGGCAATCCTTCTCAAGTGGTCTCTGGCAGTTCTCATATCCAAGATACTGCTGCCAGCATGCAGCAGCAAGGTGCTGTTTCATCAAGACACATGCCTAATTTCATGATGCCTACTCAAAGTGGACAGGTAGCTGTATCCCCCCATGCCAGTCAGAATTATCAAGTTGAGGTCTCCCCCAGCAATCAGAAAGGTTTTGGAGTGGTGCAGGGAACAGATGCCTCTGTTTTATacaattctcaggctttccagcaacctaataacaattctctggctttccaacaacccaataaTTCTTTTGCCTTATCTAATCAAGTTAATAGTACTAATGCTTCACAGCAGCAAACTGCCATGCCATATACAGTGGACCAGGTAAACCCGGACACCCCCAATCAGCAACTTCCTATGTTTGGAGTCAGTCAAGGACAAACAGAGGTAGAGGCTGATAAGAATCAGAGATACCAGTCAACGTTACAATTTGCTGCCAATCTTCTTCTCCAAATACAACAACAACAGCAACAAGCCCCAGGAGGACATGGGCCAGGACAATGA 2997 0.4424 MPLPAKPMRDFDESAPPSNNLWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISQAVTKEDLEAEFHKFGTIEDFKFFRDRNTACVEFFNLEDACQAMKIMNGKRIGGEHIRVDFLRSQSTKRDQLLDYGQFQGKNLGPTDAYSGQKRPLHSQPPMGRKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPSRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSISDLVPGSDYPGFFPGSNGPKPDVLLNDHPFRPLQMDAFGHNRPMGPNNFPGQLPPSGIMGPNIPMRPFGPHSGVESVISGPEFNEINALHKFQDGSSKSSMGPNWKRPSPPAPGMLSSPAPGARLPTRSTSGAWDVLDINHIPRDSKRSRIDGPLPVDEGPFPLRNIDDRGLALEQTYGIDPAIDGGGSGPYVNIQGKSHLGPVSSRITAGVHGVAQPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPPVPSSAPMQQPSHLRVPTTQYMQQIPPSQTEYGLIPVKEEHILPMDYNRPLHEDSKLPAKPVYPPTGGPPPVHSGPPDYAPNNTVAGSQAGVALTPELIATLASFLPTTTQSPATDGAKSAVGSSTMKPPFPPMTPNDGNQSHLWKQDNQIADQSTHPPQQLRSMYNIHNAHYQPYPPASAPSGNPSQVVSGSSHIQDTAASMQQQGAVSSRHMPNFMMPTQSGQVAVSPHASQNYQVEVSPSNQKGFGVVQGTDASVLYNSQAFQQPNNNSLAFQQPNNSFALSNQVNSTNASQQQTAMPYTVDQVNPDTPNQQLPMFGVSQGQTEVEADKNQRYQSTLQFAANLLLQIQQQQQQAPGGHGPGQ 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01155 998 SUPERFAMILY RNA-binding domain, RBD 6 92 IPR035979 GO:0003676
Gma11g01155 998 MobiDBLite consensus disorder prediction 805 873 - -
Gma11g01155 998 CDD RRM3_Spen 98 167 - -
Gma11g01155 998 MobiDBLite consensus disorder prediction 741 755 - -
Gma11g01155 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Gma11g01155 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Gma11g01155 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Gma11g01155 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Gma11g01155 998 Pfam SPOC domain 506 623 IPR012921 -
Gma11g01155 998 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 998 - -
Gma11g01155 998 Gene3D - 206 297 IPR012677 -
Gma11g01155 998 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 998 - -
Gma11g01155 998 CDD RRM3_Spen 21 90 - -
Gma11g01155 998 SMART rrm1_1 97 164 IPR000504 GO:0003723
Gma11g01155 998 SMART rrm1_1 20 87 IPR000504 GO:0003723
Gma11g01155 998 SMART rrm1_1 217 285 IPR000504 GO:0003723
Gma11g01155 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Gma11g01155 998 MobiDBLite consensus disorder prediction 682 718 - -
Gma11g01155 998 MobiDBLite consensus disorder prediction 181 213 - -
Gma11g01155 998 SUPERFAMILY RNA-binding domain, RBD 97 288 IPR035979 GO:0003676
Gma11g01155 998 MobiDBLite consensus disorder prediction 741 776 - -
Gma11g01155 998 MobiDBLite consensus disorder prediction 695 710 - -
Gma11g01155 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Gma11g01155 998 Gene3D - 94 203 IPR012677 -
Gma11g01155 998 MobiDBLite consensus disorder prediction 382 417 - -
Gma11g01155 998 MobiDBLite consensus disorder prediction 816 873 - -
Gma11g01155 998 CDD RRM3_Spen 218 287 - -
Gma11g01155 998 Gene3D - 5 93 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01155 Gma-Chr11 9730477 9741686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01155 20 279 Eukaryotic Initiation Factors Gene Family AT2G23350 23.404 3.36e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01155 - - gmx:100777570 1971.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01155 11 9730477 9741686 Gma11g01155 11 9730477 9741686 ECH
Gma12g00456 12 3731754 3743232 Gma11g01155 11 9730477 9741686 GST
Gma13g03086 13 45140447 45145927 Gma11g01155 11 9730477 9741686 PCT
Gma15g00276 15 2399252 2412943 Gma11g01155 11 9730477 9741686 PCT
Gma11g01155 11 9730477 9741686 Gma13g03086 13 45140447 45145927 PCT
Gma11g01155 11 9730477 9741686 Gma15g00276 15 2399252 2412943 PCT