Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01148 ATGGAAGACCATGTTTCCCCTGAGGGAAAGGAAGTTAGCTGTTGCACACCTCCTGGGGCTCAGTTGGAGGAACCAACATCGGTAGACGGTGGAATGAAAAAATCTGCTTCAGAGGACATGTTTAGCAACTTCTCAGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGCCCATCCATGACTGATCAGAGTTTGGCTAATGTGTTTTCATCGTTTTCCTTGGCGCCATATCCAGTACCTGATGTGTTGAATTTAGTGGAGCATGGAAATGGTCCATTCTTTATGACAGAAGATAGTGAAATTCACAATGATATGGAAAGTGCTCCTAGTTGTGGGGAGAGAATTATATTTCAGCAGATGGACTTTCAACTTGGGTTCTTAGATGAAGCAAATGATTCAAATAGCTTAGATTCAAAACAAAAACCTAATGGCACATCTCAGGAAGTTAATACCACAGACATGTGCAATTACATAATCTCAAGTTCACCAGGTAGGTCACTTGATGATAGAATGCTGAGGGCTTTGTCCTTCTTTATGGAATCAGCTGATGGGGGAATGTTGGCACAAGTTTGGGTGCCAATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATCGTGAAGTGTCGAGGGCATTTACATTTTCTGCAGAAGGAAAGACGCAATCATGTCCGGGGCTTCCAGCTCGCGTGTTTATATCGCACGTTCCTGAATGGACCTCCAATGTTGGTTACTACAATAAAACTGAGTACTTAAGGTTGGAGCACGCAAGGAATCACGAGATTCGTGGATCTATTGCTCTTCCTATATCTGATGTGCACTCTCAAGTGCCATGTGCTGTATTGGAACTAGTTACTACAAAGGAAAAGCCTAACTTTGACAGAGAATTAGAAATTGTTTCTCAAGCACTCCAGCTTGTAAATTTAAGGACTACTATGCCTCCACGACTTCATCCTCAGTGTCTATCAAGTAACAAAAGAGCTGCTTTGACTGAGATAATTGATGTGTTACGAGCCGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCCTGTTGTTACAGTGAGGGAATAAGAAACGAAACTGACAGAATACGAATCAAAGAGGGTCATACAAGTCCTAATGAAAAATGTGTACTATGTATTGAAGAATCAGCTTGCTATGTAAATGATGGAGCTGTAGAAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATTGCTGGGAAAGCTCTTCAATCAAATCATCCGTTCTTCTATACTGATGTGAAGACATATGATATTGGTGAATATCCCCTTGTTCATCACGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACCTACACCAATGATGATGATTACATATTAGAATTCTTTCTGCCTGTGAATATGACAGGGAGTTCAGAACAGGAACTTTTATTGGACAATCTCTCCAGTACCATGCGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGAATAGAAGGTTCCCAAGGTGGGTTTCCAAAGGAAAAAGTCTCAGGTTTTTTTCCCATGTCCAGGAGAAACTCTCAGATAGCATTCATAAGCGATGACCATGATTCTGTCCTGAAGATGTCCTTGAAGGCATCTAACATGAGAAATAATGGAATTGAAGCCGTTCATAGTCAGACAATGAATGGATCAAGAAAGCAGGTAGAGAAAAAGAGAAGCACAGTGGAGAACAATGTTAGTTTGAGTGTTCTTCAACAATACTTTTCCGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGACAACATGGAATTTCAAGATGGCCATCCCGAAAGATAAATAAAGTGAATCGTTCGTTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGCTAAAGTTTGATCCTTATACCGGGGGGTTTATAGCCGGAGGATCAATCATGCAGGAAACGGAAGCACATAAATATCTTGTGTTTCCTGAGAAAAGTTCTGTGAAAGATCCTAAGCCTGCAACACAAAAAAAAGTCTCAGTAGCTCCAGCACCTGCCAGCACTATTGAGAATTCAACAATTAAGTTGAATGATGATGAAGGTGTTTGTCTGGTGGGAAACAAGCTTGTGCACTCAAGAAGTATTCCTAACTCCAACAGCGGTGAGGGAGAATTGAAGAAAGACAATGTTTCTTCTGATGATTCAAAATCAATGACCATGAATGATGGATCATGCCATAAAGCTTGCCATTGGAAAAAGACTAAGGATTGTCCTGAACAAACTTGTTCAATGTCCTTGGTAACTGATGAGGTTGAAGTTGGTGTAGATAGGGTAGAAGGAGCTGATGAACATAACCATCCTACTTCTTCAAGCACTACAAACTCATCCAATGGCTCTGGCTCAATGATGCATGGAAGCTCATCATGCTCTCATGAGAACCAAAAGTATTCAAAAGTTAAATCAAATTGTGTTGATAGTGGGTCAAAAATGATTGTGAAAGCTAGCTACAGGGGTGATACTATTCGTTTCAAGTTTGATCCATCTTCAGGTTGTTTCCAGCTATATAAAGAAGTTGCAACAAGGTTCAAATTGCAAAATGGATCATTCCAGCTCAAATATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCGGATTTGCAAGAATGTACAGAAATTTTGGATGACATTGGAACACGTTGTGTGAAGTTTCTTGTCCGTGACGTGCCTTGTGTTTTAAGTAGCCATGGCAGCAACAGTTGCTTCTTGTCAGATAGCTCTTAG 2898 0.4092 MEDHVSPEGKEVSCCTPPGAQLEEPTSVDGGMKKSASEDMFSNFSELMNFDTYAGWSNSPSMTDQSLANVFSSFSLAPYPVPDVLNLVEHGNGPFFMTEDSEIHNDMESAPSCGERIIFQQMDFQLGFLDEANDSNSLDSKQKPNGTSQEVNTTDMCNYIISSSPGRSLDDRMLRALSFFMESADGGMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKTQSCPGLPARVFISHVPEWTSNVGYYNKTEYLRLEHARNHEIRGSIALPISDVHSQVPCAVLELVTTKEKPNFDRELEIVSQALQLVNLRTTMPPRLHPQCLSSNKRAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIRNETDRIRIKEGHTSPNEKCVLCIEESACYVNDGAVEGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQELLLDNLSSTMRRICKSLRTVSDAELTGIEGSQGGFPKEKVSGFFPMSRRNSQIAFISDDHDSVLKMSLKASNMRNNGIEAVHSQTMNGSRKQVEKKRSTVENNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSIMQETEAHKYLVFPEKSSVKDPKPATQKKVSVAPAPASTIENSTIKLNDDEGVCLVGNKLVHSRSIPNSNSGEGELKKDNVSSDDSKSMTMNDGSCHKACHWKKTKDCPEQTCSMSLVTDEVEVGVDRVEGADEHNHPTSSSTTNSSNGSGSMMHGSSSCSHENQKYSKVKSNCVDSGSKMIVKASYRGDTIRFKFDPSSGCFQLYKEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECTEILDDIGTRCVKFLVRDVPCVLSSHGSNSCFLSDSS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01148 965 PANTHER PROTEIN NLP8 5 962 IPR045012 GO:0003700
Gma11g01148 965 CDD PB1_NLP 866 946 IPR034891 -
Gma11g01148 965 Pfam RWP-RK domain 602 650 IPR003035 -
Gma11g01148 965 ProSiteProfiles PB1 domain profile. 865 947 IPR000270 GO:0005515
Gma11g01148 965 Pfam PB1 domain 868 946 IPR000270 GO:0005515
Gma11g01148 965 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 962 - -
Gma11g01148 965 MobiDBLite consensus disorder prediction 815 848 - -
Gma11g01148 965 MobiDBLite consensus disorder prediction 821 848 - -
Gma11g01148 965 MobiDBLite consensus disorder prediction 748 775 - -
Gma11g01148 965 SUPERFAMILY CAD & PB1 domains 862 949 - -
Gma11g01148 965 Gene3D - 862 944 - -
Gma11g01148 965 ProSiteProfiles RWP-RK domain profile. 582 670 IPR003035 -
Gma11g01148 965 MobiDBLite consensus disorder prediction 1 34 - -
Gma11g01148 965 SMART PB1_new 865 947 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01148 Gma-Chr11 9655663 9660015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01148 18 961 NLP Transcription Factor Family AT2G43500 50.469 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma11g01148 PB1 1.7e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01148 - - gmx:100812527 1912.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01148 11 9655663 9660015 Gma11g01148 11 9655663 9660015 ECH
Gma12g00448 12 3655240 3659576 Gma11g01148 11 9655663 9660015 GST
Gma13g03098 13 45234191 45239938 Gma11g01148 11 9655663 9660015 PCT
Gma15g00266 15 2288704 2296720 Gma11g01148 11 9655663 9660015 PCT
Gma11g01148 11 9655663 9660015 Gma13g03098 13 45234191 45239938 PCT
Gma11g01148 11 9655663 9660015 Gma15g00266 15 2288704 2296720 PCT