Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01145 ATGACTACTGGTGCTGAGAGATACCCTGATTTCTTCAAAGTCTTCCTTCCCGAGCGGCACTCTGAAAGAATGCTTATACCAAATGCTTTTGTGAGGTTGCCACAGTCACAAGGAAGGATCCCTGAGGATGTAATCCTCAGAAATATAAGTGGGAGAGTGTGGCAGGTCAAAACACGCTATATCGGAGAGAAACTATATTTTGATGATGGATGGAATGCTTTCCACGAAGAAAACTGCTTAGGACATGCAGACTTTCTTGTCTTCAAGCATGACCGAAGTAATGAGTTCAAGGTACTCATCCTTGAATCATCAACACAGTGTCAAAAGCCTGTGGTAAAGATGGAGGAGGAGAATGAACAAGAGCAAGCAGCAGCGCAACATGCTGAGGACTGTGATATAGAGGAGGAGGAAGACAGTTCTTCCAAGGATGAGAACTATGATGACGACAGCGATGACAGTGATTTTGATGATGATGAAGAGAGTAAAGAAGAATTCGGTGCTGGATTCAAGAGTCAAAGTCATCATAGAAGAGCTTGCAAAAGGGAGACTGCATCAAGTTCCAACCCCGATGCTGAAGATCCTCTTCCAGAATATGTATTTGATCCAGAAATGTGTATTCAGCGTGAGAATCATTTTTTTAAAGCAAAGCTCTACAGAACTAGACCCAACGAATTGCATATTCCAGGAAATTCCATTCAAGAATTTTCCCTTACTTTTCCTGAAAATTATGTTACCCTTATATGTTGTCAACCCTGCCAGCGCAAGGACATTCCAATGAATGAATTGGGAGATTATCATCATAACTTGACACAACAGACACACATCCGCAAAAAGTATCAGGAAGTGACAGGAAGAGTGTGTAGGTGGCAAGATCGAATATGCATCAAGGGTTGGGCAAGCTTTTCTAAAAGGAATAAGATTGAAAGAAATGATACATGCTTCTGTGAAGTAATATCAGGGGAAGACCAAGTAGTAAGAACACTTGAGAATTTTGTACGGAGGATGGAGTGTGAGAGCTCAGCTAGGGTTTTGGAGGAGGAGTCTGAACAGGAGGAGGATTTGCTGCAACATAGCCGCGTGATGGAGAAACGGAAGGCTGATGAAAATAAGATCAAGGCTGATCGATGA 1128 0.4238 MTTGAERYPDFFKVFLPERHSERMLIPNAFVRLPQSQGRIPEDVILRNISGRVWQVKTRYIGEKLYFDDGWNAFHEENCLGHADFLVFKHDRSNEFKVLILESSTQCQKPVVKMEEENEQEQAAAQHAEDCDIEEEEDSSSKDENYDDDSDDSDFDDDEESKEEFGAGFKSQSHHRRACKRETASSSNPDAEDPLPEYVFDPEMCIQRENHFFKAKLYRTRPNELHIPGNSIQEFSLTFPENYVTLICCQPCQRKDIPMNELGDYHHNLTQQTHIRKKYQEVTGRVCRWQDRICIKGWASFSKRNKIERNDTCFCEVISGEDQVVRTLENFVRRMECESSARVLEEESEQEEDLLQHSRVMEKRKADENKIKADR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01145 375 CDD B3_DNA 9 101 IPR003340 GO:0003677
Gma11g01145 375 MobiDBLite consensus disorder prediction 130 162 - -
Gma11g01145 375 MobiDBLite consensus disorder prediction 352 375 - -
Gma11g01145 375 MobiDBLite consensus disorder prediction 345 375 - -
Gma11g01145 375 SUPERFAMILY DNA-binding pseudobarrel domain 257 320 IPR015300 -
Gma11g01145 375 Coils Coil 111 131 - -
Gma11g01145 375 MobiDBLite consensus disorder prediction 111 196 - -
Gma11g01145 375 Pfam B3 DNA binding domain 11 101 IPR003340 GO:0003677
Gma11g01145 375 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
Gma11g01145 375 MobiDBLite consensus disorder prediction 112 129 - -
Gma11g01145 375 Gene3D - 3 107 IPR015300 -
Gma11g01145 375 PANTHER B3 DOMAIN-CONTAINING 7 354 - -
Gma11g01145 375 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Gma11g01145 375 SMART B3_2 11 104 IPR003340 GO:0003677
Gma11g01145 375 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 7 354 - -
Gma11g01145 375 Gene3D - 199 330 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01145 Gma-Chr11 9637203 9640262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01145 1 340 B3 DNA Binding Superfamily AT3G06160 24.011 2.20e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma11g01145 B3 6.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01145 - - gmx:100811445 616.305