Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01135 ATGTTCCATTGCTCCTCTATCACTATCACAATGGGAGACTTTTCATTACACGAAAACAACATGGATTATCATCAGGACAACCCTGCAGTCTTCTTCACTATCATCAACAACACCAAGCTACTGAAAGTCCCAGAGGAGTTTCTGAAACATTTGAATGAAGACTTGTCTAGTAATGCAGTTCTTATAGGCCCTTCTGGTGATAAGTGGCAAGTAACTATTTTGAAGAAAGGAAATAACGTCTATATGAACAATGGTTGGTCACAATTTCTGAAAGACAACTCAGTGGTGCTTGATGAGTTCTTGCTTTTCACATATCATGGAGGAAACTGCTTCTATGTTCAAATTTTTTGTGGGAATGGATTGGAGAGGCTATGCCTCAAAGAAACAAGACAAGAACAAGCTGTCACCCCTCAATTTTTAGATCTGACTTTTAGCAACAAAGCCTTAATTTCTGATGGATGTGAGATAAAGAAAACAAGTCAAGAACAAGCTTCCACCCCAAGTTTGGTAAGGATAACAAACAAGAGTAAACAAAGAAAAACTTCTGCTGGTTCATTTCTTCACCATGAATCGAAGTCGTCGTGCCAAGAAGATCTGCCTTTCAGCAACAAAGCCTTACTTTCTAAGGACTTCCCAAAGCCTCTGAGTTCAATCAAATTTGAAACTTCAGAAGCATGCAAATTGGCCGAGTCCTTTACCTCTCGCAATCCTCATTGGAAGCACCTCATGACAAAATGCAATGTGGAAGATCATTGCACATTGAAAGTCCCAGAGGAGTTTCTGAAGCATTTGAATAAAGACTTGTGGAGTAATTCAGTTCTTATAGGCCCTTCTGGTGATAAGTGGCAAGTAACTATTTTGAAGAAAGGAAATAACGTGTATATGGACAATGGTTGGTCACAATTTCTGAAAGACAATTCAGTGGTGCTTGATGAGTTCTTGCTTTTTACATATCATGGAGGAAACTGCTTCTATGTTCAAATTTTTGGTGGGAATGGATTGGAGAGGCTATGCCGCAAAGAAGCAAGAGAAGAACAAGCTGCTACCCCTCAATTTTTTGATCTGCCTTTCAGCAACAAAGCCTCAATTTCTGATGGATGTGAGATAAAGAAAACAAGACAAGAACAAGCTTCTGCCCCAAGTTTGGCGAGGACAAACAAGAGCAAGCAAAGAAAAACTTTTGTCGGTTCATCACACCTCCATGAATCGAACTCTTACAAAAAAGATCTGCCTTCCAGCAACAAAGGCACACTTTCTAAAGGATGTGAGATAAAGAAAACAAGACAAGAACAAGCTGCCACCCCAAGTTTTTTGAGGCCAAATAAGATTAAACAAAGAAAAACTTCTGCCAGATCATCAAACCTCAATGAATCCAAATCTTGTCAAGAAGGACAAGAACGAGTTGCCACCCTAAGTTGGGCGAGGACAAATAATTATAACAGTACGCAAAGAAAAACTTCAGCCGGTTCATCACACCTGCATGAATCGAATTCTTCCAAAGAAGATCTTCCTTTCAGCAACAAAGCCTCACTTTCTAAGGACTTCCCAAAGCCTCAGAGTTCAATTAATATTGAATGTTCAGAAGCATGTAAATTGGCCGAGTCTTTTACCTCTCGGAATCCTCATTGGAAGCACCTTTTGACAAAATGCAATTTGGAACGGTGCATCTTGCTTATTGCTGCTGAGTTTGCCAGAAAGTACATTCCTGAAGCACTGGAACAGATCTATCTTTGGAATTCGGAAGGAAAATCTTGGGAAGTGCGAGTGCATTATTTTAGAAATCGAAATACATGGTATGCTGCGTTTAAGAGAGGATGGGAAAGATTCGTTCGTGATAACAAGCTCATGAAAGGTGACACTTGCATTTTTGAAGTTGAAGAAGAACAAGGCCATTGGAGTGTTCACATATTCAGAACCGGATGTGCACCACATTAG 1935 0.399 MFHCSSITITMGDFSLHENNMDYHQDNPAVFFTIINNTKLLKVPEEFLKHLNEDLSSNAVLIGPSGDKWQVTILKKGNNVYMNNGWSQFLKDNSVVLDEFLLFTYHGGNCFYVQIFCGNGLERLCLKETRQEQAVTPQFLDLTFSNKALISDGCEIKKTSQEQASTPSLVRITNKSKQRKTSAGSFLHHESKSSCQEDLPFSNKALLSKDFPKPLSSIKFETSEACKLAESFTSRNPHWKHLMTKCNVEDHCTLKVPEEFLKHLNKDLWSNSVLIGPSGDKWQVTILKKGNNVYMDNGWSQFLKDNSVVLDEFLLFTYHGGNCFYVQIFGGNGLERLCRKEAREEQAATPQFFDLPFSNKASISDGCEIKKTRQEQASAPSLARTNKSKQRKTFVGSSHLHESNSYKKDLPSSNKGTLSKGCEIKKTRQEQAATPSFLRPNKIKQRKTSARSSNLNESKSCQEGQERVATLSWARTNNYNSTQRKTSAGSSHLHESNSSKEDLPFSNKASLSKDFPKPQSSINIECSEACKLAESFTSRNPHWKHLLTKCNLERCILLIAAEFARKYIPEALEQIYLWNSEGKSWEVRVHYFRNRNTWYAAFKRGWERFVRDNKLMKGDTCIFEVEEEQGHWSVHIFRTGCAPH 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01135 644 SMART B3_2 31 119 IPR003340 GO:0003677
Gma11g01135 644 SMART B3_2 239 332 IPR003340 GO:0003677
Gma11g01135 644 SMART B3_2 542 640 IPR003340 GO:0003677
Gma11g01135 644 CDD B3_DNA 547 638 IPR003340 GO:0003677
Gma11g01135 644 Pfam B3 DNA binding domain 37 116 IPR003340 GO:0003677
Gma11g01135 644 Pfam B3 DNA binding domain 545 639 IPR003340 GO:0003677
Gma11g01135 644 Pfam B3 DNA binding domain 242 330 IPR003340 GO:0003677
Gma11g01135 644 MobiDBLite consensus disorder prediction 372 463 - -
Gma11g01135 644 MobiDBLite consensus disorder prediction 502 518 - -
Gma11g01135 644 Gene3D - 523 640 IPR015300 -
Gma11g01135 644 Gene3D - 218 331 IPR015300 -
Gma11g01135 644 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Gma11g01135 644 PANTHER B3 DOMAIN-CONTAINING 242 643 - -
Gma11g01135 644 PANTHER B3 DOMAIN-CONTAINING 23 254 - -
Gma11g01135 644 SUPERFAMILY DNA-binding pseudobarrel domain 27 119 IPR015300 -
Gma11g01135 644 Gene3D - 23 119 IPR015300 -
Gma11g01135 644 CDD B3_DNA 243 329 IPR003340 GO:0003677
Gma11g01135 644 SUPERFAMILY DNA-binding pseudobarrel domain 536 640 IPR015300 -
Gma11g01135 644 MobiDBLite consensus disorder prediction 429 463 - -
Gma11g01135 644 MobiDBLite consensus disorder prediction 374 401 - -
Gma11g01135 644 ProSiteProfiles B3 DNA-binding domain profile. 542 640 IPR003340 GO:0003677
Gma11g01135 644 CDD B3_DNA 41 117 IPR003340 GO:0003677
Gma11g01135 644 ProSiteProfiles B3 DNA-binding domain profile. 239 332 IPR003340 GO:0003677
Gma11g01135 644 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 242 643 - -
Gma11g01135 644 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 23 254 - -
Gma11g01135 644 SUPERFAMILY DNA-binding pseudobarrel domain 234 336 IPR015300 -
Gma11g01135 644 MobiDBLite consensus disorder prediction 481 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01135 Gma-Chr11 9565617 9576055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01135 525 625 B3 DNA Binding Superfamily AT3G18990 34.314 2.76e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma11g01135 B3 2.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01135 - - gmx:100815555 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01135 11 9565617 9576055 Gma11g01135 11 9565617 9576055 ECH
Gma12g00437 12 3577087 3578688 Gma11g01135 11 9565617 9576055 GST