Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01134 ATGCCGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTGTCCAACCCAACCAACAACTGAGGCTTCCGGATAATTTTATGAGGAAATATGGGGGTGAACTCTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCATGTAGGATTGAAAAAAGCAGACAACAAGTATTGTTTCCTTGATGGTTGGAAAGAGTTTGTTCAACGCTATTCCATTGGTGTTGGATACTTGTTGGTATTCAGATACGAAGGAAAGTCATCTTTCAATGTCCATATTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGTCACACGAAGCAGTAATGAAGGGCTTCACTTCACAAATTGTCTTAAATTTTTTGAAGAAATGGAAGGTGAAGATTCCATTGAAATCTCGGATTCATCACCCTCCCACCTTTCACCCAGTTCATTGCAAAATCAAGCTCTTGCTGGATCAGTAGATAAAATGATGCCCGGAAAGAGTTATAATACACCTCCAGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAAGGTGGTAATGCCCATTCTTCAAGAAGTGCCAATTCACTAGATAATCGATTGACCAGAGACATAGGACTTCAGTTTAATGCAGTCGAGTTTAAAAGATCTACTGAAGAATTGAAATTGCGTGCTTCCATCGAGGAAAGGATGAAAAAAACTACAAGAAAGAAGCGAAAATCAGATGGCCAGGAACCCTCTGCTGGGCACGAAGAGGAGGTAGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCTGAAGAAAGAGAGAGGGTCATCAACGAAGCAAAAGCATTTGAACCATCTAATCCTTTCTGTCGAGTTGTCCTGCGGCCCTCATATTTATATAGGGGATGCATAATGTATCTGCCATCATGCTTTGCAGAGAAGCATTTGAATGGAGTTTCAGGGTTTATTAAACTTCAGATCTCTAATGGTAGACAGTGGCCGGTTCGCTGCCTTTATAAAGGAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACCATCTTTCATGTTACCGAGGATGTGGGACTGTTGAGCCCTCCTTTGCAGCATAACCAAAACATGACCTCAGCTAAACTGTTAAGCACTCCCTTGCAGCAACACCTCACTTCAACTAAAATGGTTAGAAATTAG 1296 0.4128 MPHPSFHKLLLPSTVQPNQQLRLPDNFMRKYGGELSPIVTLSVPDGSVWHVGLKKADNKYCFLDGWKEFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATSEINYQSVTRSSNEGLHFTNCLKFFEEMEGEDSIEISDSSPSHLSPSSLQNQALAGSVDKMMPGKSYNTPPALQNLFNGSKLNSINWGEGGNAHSSRSANSLDNRLTRDIGLQFNAVEFKRSTEELKLRASIEERMKKTTRKKRKSDGQEPSAGHEEEVEMRFRFYESASARKRTVTAEERERVINEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFHVTEDVGLLSPPLQHNQNMTSAKLLSTPLQQHLTSTKMVRN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01134 431 PANTHER B3 DOMAIN-CONTAINING 1 421 - -
Gma11g01134 431 SUPERFAMILY DNA-binding pseudobarrel domain 291 391 IPR015300 -
Gma11g01134 431 MobiDBLite consensus disorder prediction 237 257 - -
Gma11g01134 431 Gene3D - 1 99 IPR015300 -
Gma11g01134 431 MobiDBLite consensus disorder prediction 243 257 - -
Gma11g01134 431 CDD B3_DNA 296 390 IPR003340 GO:0003677
Gma11g01134 431 CDD B3_DNA 4 97 IPR003340 GO:0003677
Gma11g01134 431 SUPERFAMILY DNA-binding pseudobarrel domain 2 97 IPR015300 -
Gma11g01134 431 SMART B3_2 298 393 IPR003340 GO:0003677
Gma11g01134 431 SMART B3_2 6 99 IPR003340 GO:0003677
Gma11g01134 431 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 421 - -
Gma11g01134 431 Pfam B3 DNA binding domain 301 390 IPR003340 GO:0003677
Gma11g01134 431 Pfam B3 DNA binding domain 6 96 IPR003340 GO:0003677
Gma11g01134 431 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Gma11g01134 431 Gene3D - 275 395 IPR015300 -
Gma11g01134 431 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01134 Gma-Chr11 9558983 9562226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01134 1 397 B3 DNA Binding Superfamily AT3G18990 51.244 5.32e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma11g01134 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01134 - - gmx:100815020 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01134 11 9558983 9562226 Gma11g01134 11 9558983 9562226 ECH
Gma12g00436 12 3565767 3572470 Gma11g01134 11 9558983 9562226 GST