Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01120 ATGATGGCTCCTTCTCAGCCACCTCATTGGGCCCCATCTCCATCTCTAACACCAACACCAATCCTCCACAAGTCTTTCTTTCCCCCACCGTCAAACTCGCCGGCGGTTGACTTCAGTCCGCCCTTGATTGCAATGGTCGTCGTCGTCGCCGCCGCTTTCCTCGTCGTCACCTACTCCCGCCTCATCGCGCGCCACCTCAGACCTCCCATCCACCGCCTCCTCCGCCGCTTCCGTCGACGCCGCTTCCTCCCATCCTCCGTCGGCGACCTCGAGTCCTTACCCTACGAGTCTCCCTTTGATGGACCGCACGTGTTCTCTCCTTACGGTTTGGACGAAACGGTGATTAAAACAATTCCGTTTTCGCTTTACACCGCGAAATACGACGCTCGTTTTGACGAGTCTCGCAACGACTGCGCCGTTTGCCTTCTCGAATTCGAAGACGATGATTACGTGAGAACGCTTCCCATTTGTTCGCACACGTTCCACGTGGACTGCATCGACGCGTGGCTTCGCTCGCACGCTAACTGTCCTCTCTGCCGCGCCGGAGTTCTCTGCACCGATTCACCTTTCACTCCGATGATGGCTGCCAGAATCCGACCAAGCTTCGACGACGACACAATTCTCCACCGTATCAGTATAGATCCTCTCATCGATCCGCCGCTGCTGCCTGCGGCGGCTATCTCCTCCGTGCCGGAGATTACTCCCTGCGTCGACGAGAATTCTCCAAGGAGGAACCAGAACCATGCAAACGTGAATTCAGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGATCGTACTCGTTCGGATTTGAACGGAGTCTGGCGTCGGAGAGGATGGTGATGGAACCGGCGACAGCGTCGCCGTGGCGGTACCGGAGAGGGAGTAGTAGTTTCTGGAGCAAGAGGCCTTCGCCGTTTGGATCGTTGGGGAAGCCGAGGGTGTTTTCGTTTAGGTATTATAGAGGAATGAAGTCACCGTTCTTCCGGCGGAGGGGATTTTTTCCGTTGTCGGAGTCGAGCGTGAGGTACGGCGGCGGCGGCGGCGGCGGGGGGAGCTCGTCGCGGCGGAGCAAGTCGATAGCAAGTCCGATGTTTCTGCGGTCGTCGGGGGTGACGTCGGCGGCGGCGTTCTCGTCGAGCAGGCTGAGGTGCGGGGATCCCGAGGCGCTTCTTTCGCCGGAGAGGTTTAACGGGAGGTGA 1200 0.5817 MMAPSQPPHWAPSPSLTPTPILHKSFFPPPSNSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPIHRLLRRFRRRRFLPSSVGDLESLPYESPFDGPHVFSPYGLDETVIKTIPFSLYTAKYDARFDESRNDCAVCLLEFEDDDYVRTLPICSHTFHVDCIDAWLRSHANCPLCRAGVLCTDSPFTPMMAARIRPSFDDDTILHRISIDPLIDPPLLPAAAISSVPEITPCVDENSPRRNQNHANVNSEDCFRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGGGGGSSSRRSKSIASPMFLRSSGVTSAAAFSSSRLRCGDPEALLSPERFNGR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01120 399 SMART ring_2 138 179 IPR001841 -
Gma11g01120 399 SUPERFAMILY RING/U-box 123 186 - -
Gma11g01120 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 184 IPR013083 -
Gma11g01120 399 CDD RING-H2_PA-TM-RING 137 180 - -
Gma11g01120 399 Pfam Ring finger domain 136 180 IPR001841 -
Gma11g01120 399 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Gma11g01120 399 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 371 - -
Gma11g01120 399 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 371 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01120 Gma-Chr11 9454445 9456279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01120 31 399 C3H Transcription Factor Family AT3G18930 51.117 1.90e-96 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01120 - K19041 gmx:100806115 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01120 11 9454445 9456279 Gma11g01120 11 9454445 9456279 ECH
Gma12g00424 12 3478736 3479797 Gma11g01120 11 9454445 9456279 GST