Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01110 ATGGACGTTTACGCGAGCAGCGACGAAGATTACCATTACGACTCCGACCACGAGGACTCCGTCGAGGCCTACGAAAACGACGAGAATTACGCCTTGCTCTCTTCCAAGGGCACCACTACTAAGGTGATTACAAAGGAATCACTGCTAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTATCGGTGAGAGAGCAACATGCTCGGACGCTGCTTATTTTTCATCGTTGGGATGTGGAGAATCTGTTTGAAGTGTTAGTAGACAAGGGGAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCGCAACTCTGACTCACCTGTTCCTCCTGCATTCATGTGCTACATCTGTATGGAGGAAGTTCCTAGTAGCAAAACAACGAGAATGGACTGCGGTCACTGCTTTTGCAACGGCTGTTGGATAGAGCACTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGCATTAGATGCATGGAACACAAGTGCAATTCCATATGTGATGATGCCGTTGTAAGAACTCTACTCAGTAGAGAGCACCCTCATATGGCAGAGAAATATGAACGCTTTCTGCTTGAATCTTACATTGAAGACAATAAGAGAGTTAAATGGTGCCCCAGCACACCTCATTGTGGGAATGCAATACGGGTCGAGGATGATGAACTGTGTGAGGTAGAATGTTCATGTGGTGTACAATTTTGTTTTAGTTGTTTGTCAGAAGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGCCGAGATGAATCAGAAACAGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGATACAAAGAGCAAGAAAAGACAGCTGAACGTGCAAAGAGGGATCTATATCGTTATATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGAGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACAGATGCTCAACGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAACAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTTGAGATAAGGATGCAGATACTCAACCTTTCAACAATTATTGACAAACTTTGTCAAAAAATGTATGAATGCATTGAGAATGATCTATTGGGTTCTCTCAATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCATCAGAACTTTCAGTTGGCTGGAACAACAAAGTCAATAATACTGTTTGA 1599 0.419 MDVYASSDEDYHYDSDHEDSVEAYENDENYALLSSKGTTTKVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVENLFEVLVDKGKSFLFAEAGVSVDEHRNSDSPVPPAFMCYICMEEVPSSKTTRMDCGHCFCNGCWIEHFIVKINEGQSKRIRCMEHKCNSICDDAVVRTLLSREHPHMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGVQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMTDAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIERASELSVGWNNKVNNTV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01110 532 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 502 IPR031127 GO:0004842|GO:0016567
Gma11g01110 532 SMART ibrneu5 191 253 IPR002867 -
Gma11g01110 532 SMART ibrneu5 261 326 IPR002867 -
Gma11g01110 532 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 502 - -
Gma11g01110 532 SUPERFAMILY RING/U-box 117 203 - -
Gma11g01110 532 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 -
Gma11g01110 532 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Gma11g01110 532 Pfam Ariadne domain 330 530 IPR045840 -
Gma11g01110 532 Gene3D - 249 496 - -
Gma11g01110 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 206 IPR013083 -
Gma11g01110 532 SUPERFAMILY RING/U-box 261 318 - -
Gma11g01110 532 SUPERFAMILY RING/U-box 191 259 - -
Gma11g01110 532 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01110 Gma-Chr11 9384872 9388691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01110 60 527 ARIADNE family AT2G16090 72.034 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01110 K11968 - gmx:100808068 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01110 11 9384872 9388691 Gma11g01110 11 9384872 9388691 ECH
Gma12g00416 12 3413387 3424111 Gma11g01110 11 9384872 9388691 GST