Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00947 ATGGCAAGCAATCCTGGAAATCATGCCCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGATATTATGCTGGCTGAATATTTTGGTACCATCGGATTAATAAAGAAAGATAAACGTACAGGGAGACCAAAAATATGGTTATATCGAGACAAAGAAACTAATGAACCAAAAGGAGATGCTACCGTAACATATGAGGATCCGCATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTTTATAGCAGAGTCAAAAAACAAGGATGAGCAAGCATATAATGCAGCAGTTGAACCTGTAGTTGCTGATGATGTTGGTGGACTAGAGGAAACTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGTCAAAATGATTCTTCAGGCAAAGCATGGCAACAAGATGGCGATTGGTTGTGTCTGAATACAAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCACAAGAATCAGGGGGCATTGGCCGGCCAGCTGGTGGAGGACTCTTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAGACGTCGTAGAAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTTAAGAAAAAATACCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTCGAGGAACTAGGGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATGATGGGGAGAGCAGGAACAGAGAGCGAAGCGAAAAAGAGAGGCCTAGCAGTTGGAATAGAGAGAGGGAGAGGGGAAgagaccgagattgggattatCTTTCCCTTCCCTTCAATTTCTCCTCAAACCCTACCTTTCTCCGCGTCGTTTCGCAACCGACTGCATCTTGGATACGGGAACAGTGTGCCAATATGAGCTCTCGGGCAGGCAAGGGACCTGCTATCAGAAGTTACCGGCGGAGAAAGACAGCTTTGGACCTTGACCTTAACCGTTTACCGGCTGGTGAGAATCGTGAGCAGGAGGGACCTTCAACTCAGGCGGTGCCTCAAGAAATTCAACTTGAACAGCAGCCACAGGTTACTCAACCTCCGATGATTGACGTGGAAGCCATTGATGATGATGTTGTTGAATGTACCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCAAGAAGAATTCGTAGGAGGACTGTAGTTGATATTGATCTAGAAGATCAGACTAGGCGCAACAAACGCCGAAGAGAATTGCCAAATCTGATTATTAATTGTGATAAGTATATAAATTTGGAAGGCAGTAGCAGTTCCATGGGGGGAAGTGTTAAAAAGACACCCGAACCTCCAAAGGAGCTTGTCTTCAACTGTCCAATATGTATGGGCCCTATGTTGAAGGATTTCCATGGAAGCTGTATTGAGGAGAATGGGGAATTGAAGAAACACCATTGTACTTTGGACAATACTGAATGGCTtggcttttcttcttgttgttgttggtgcgtcttcttgttgtggtggtttcgtcttgttaatcgccttcgagATTCGCTCGCATTGCTTCGCCTCACAACAGCAGCTGCAGCAGCAATGgctcccaaacgaggtggaaaggctccggctcttgccgctaagaagaagcctgagaaggtcacgaatccgttgttcgagaagcgtccgaagcagttcggaatcggaggggcgttgcctccgaagagagacttgactaggttcgtgaagtggccaaagaatgttcaaattcagaggaagaagaggattctgaagcagaggttgaaggttcccccagctttgaaccagtttaccaaaactcttgacaaaaacctagCAACAAGTCTGTTCAAGTTGCTTCTGAAGTACAGGCCCGAGGACAAAGCTGAAAAGAAGGAGAGGCTCTTGAAAAGGGCTCAGGCAGAGGCTGAAGGCAAAACTGTTGAAGCTAAGAAGCCTATTGTTGTGAAGTATGGTCTCAACCATGTTACCTACCTCATCGAGCAGCAGAACAAAGCACAGCTCGTTGTGATTGCTCACGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCTGCTTTGTGCAGGAAGATGGAAATTCCGTACTGTATTGTGAAGGGAAAGGCCCGCTTGGGAACGGTTGTCCACAAGAAAACTGCATCCGTTTTGTGTTTGACCACTGTTAAGAATGAAGATAAATTGGAGTTCAGCAGAGTTTTGGAGGCTATCAAGGCTAACTTCAACGACAAATATGACGAGTACAGAAAGAAGTGGGGTGGTGGGATCATGGGATCCAAATCCCAAGCGAAAACCAGAGCAAAGGAGAAGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGACTTAG 2643 0.4026 MASNPGNHAPSNGSVYVCNLPYGTDDIMLAEYFGTIGLIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVFIAESKNKDEQAYNAAVEPVVADDVGGLEETTKDVNGGSGRGRGQNDSSGKAWQQDGDWLCLNTSCSNVNFAFRGACNRCGTARPAGASGISGAGGRGKGRAAQESGGIGRPAGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKYRAKTQQAEAARGLPGSGRAGWEVEELGIDRDARESRDRGRERNDGESRNRERSEKERPSSWNRERERGRDRDWDYLSLPFNFSSNPTFLRVVSQPTASWIREQCANMSSRAGKGPAIRSYRRRKTALDLDLNRLPAGENREQEGPSTQAVPQEIQLEQQPQVTQPPMIDVEAIDDDVVECTPRAFAEAKNNSRRIRRRTVVDIDLEDQTRRNKRRRELPNLIINCDKYINLEGSSSSMGGSVKKTPEPPKELVFNCPICMGPMLKDFHGSCIEENGELKKHHCTLDNTEWLGFSSCCCWCVFLLWWFRLVNRLRDSLALLRLTTAAAAAMAPKRGGKAPALAAKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKLLLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMT 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00947 880 Gene3D - 12 95 IPR012677 -
Gma11g00947 880 SUPERFAMILY Ran binding protein zinc finger-like 207 243 IPR036443 -
Gma11g00947 880 PRINTS Ribosomal protein L7A family signature 667 684 IPR001921 -
Gma11g00947 880 PRINTS Ribosomal protein L7A family signature 687 706 IPR001921 -
Gma11g00947 880 PRINTS Ribosomal protein L7A family signature 711 724 IPR001921 -
Gma11g00947 880 PRINTS Ribosomal protein L7A family signature 650 667 IPR001921 -
Gma11g00947 880 PRINTS Ribosomal protein L7A family signature 839 859 IPR001921 -
Gma11g00947 880 PRINTS Ribosomal protein L7A family signature 807 831 IPR001921 -
Gma11g00947 880 PRINTS Ribosomal protein L7A family signature 745 765 IPR001921 -
Gma11g00947 880 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Gma11g00947 880 ProSiteProfiles Zinc finger RanBP2 type profile. 213 242 IPR001876 -
Gma11g00947 880 ProSitePatterns Ribosomal protein L7Ae signature. 788 805 IPR004037 GO:0042254|GO:1990904
Gma11g00947 880 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Gma11g00947 880 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 366 - -
Gma11g00947 880 MobiDBLite consensus disorder prediction 314 357 - -
Gma11g00947 880 Gene3D - 671 855 IPR029064 -
Gma11g00947 880 MobiDBLite consensus disorder prediction 120 147 - -
Gma11g00947 880 SMART rrm1_1 14 95 IPR000504 GO:0003723
Gma11g00947 880 MobiDBLite consensus disorder prediction 254 277 - -
Gma11g00947 880 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Gma11g00947 880 MobiDBLite consensus disorder prediction 132 147 - -
Gma11g00947 880 Coils Coil 257 277 - -
Gma11g00947 880 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Gma11g00947 880 Coils Coil 722 742 - -
Gma11g00947 880 SUPERFAMILY L30e-like 709 851 IPR029064 -
Gma11g00947 880 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Gma11g00947 880 Pfam Zn-finger in Ran binding protein and others 216 242 IPR001876 -
Gma11g00947 880 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 736 827 IPR004038 -
Gma11g00947 880 SMART zf_4 151 177 IPR001876 -
Gma11g00947 880 SMART zf_4 215 239 IPR001876 -
Gma11g00947 880 ProSitePatterns Zinc finger RanBP2-type signature. 217 236 IPR001876 -
Gma11g00947 880 CDD RRM_SARFH 15 97 - -
Gma11g00947 880 SUPERFAMILY Ran binding protein zinc finger-like 142 181 IPR036443 -
Gma11g00947 880 Gene3D - 212 243 - -
Gma11g00947 880 Gene3D - 145 182 - -
Gma11g00947 880 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 366 - -
Gma11g00947 880 PRINTS Ribosomal protein L7A/RS6 family signature 785 795 IPR018492 -
Gma11g00947 880 PRINTS Ribosomal protein L7A/RS6 family signature 749 763 IPR018492 -
Gma11g00947 880 PRINTS Ribosomal protein L7A/RS6 family signature 795 809 IPR018492 -
Gma11g00947 880 MobiDBLite consensus disorder prediction 296 357 - -
Gma11g00947 880 MobiDBLite consensus disorder prediction 244 277 - -
Gma11g00947 880 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00947 Gma-Chr11 8002732 8019252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00947 621 879 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.328 3.89e-156 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00947 - - gmx:100793376 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00269 12 2161392 2169080 Gma11g00947 11 8002732 8019252 GST