Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma11g00894 | ATGGAAGCCATATTCGTCACCAAACCCGCTTCCCATTCTCTCCTCTTAACTAAACTCTCTCCGAATCCCAAACACTTGTTCCCTCCACACCAACAATCCTTTCACAACATCCGCCACAAACCCACGCGCTTCCGCCCCGTCATCGCTGTTTTCCAAAACCAACATCAACAAGATGCAGCTGCAGCTTCCAACCACACCGAAGATGAGTCCTACGGCGAAGTCAAAGGCATCATTGGAAGCAGAGCCTTGGAAGCCGCCACCGGAATGGAGTACCTCATCGAGTGGAACGACGGCCACGCGCCGTCCTGGGTTCCCGCCGACTTCATAGCCAAAGACGTCGTCGCCGAGTACGAAACTCCCTGGTGGACTGCCGCCAAGAAAGCCGACGAGTCCGCGTTGAAAAACTTAATCGAATCCGACGACGGCCGCGACGTCGACGCCGTTGACGCCGACGGCCGCACTGCGCTCCTCTTCGTCGCCGGACTCGGCTCGGAGTCCTGCGTGAAGCTGCTAGCGGAGGCCGGCGCTAATCTGGACCACCGAGACCGGAGCGGCGGCCTCGCGGCTCTGCACATGGCGGCGGGGTACGTCAGGCCCGGCGTGGCGAAGGTTCTCTTGGATCTCGGCGCGGATCCCGAGGTGGCGGACGACCGCGGGAGAACGGCGTTGGATCTGGCGAGGGAGATTCTGAAGGTGACGCCGAAGGGGAATCCGATGCAGTTCGGACGCAGGATTGGACTGGAAGGTGTGATTAGGGTTTTGGAAGGGGCAGTGTTCGAGTACGCGGAGGTGCAGGAGATTCTGGAACGGAGAGGAAAGGGTGAGAATTTGGAGTATCTTGTGCGGTGGAAGGACGGTGGTGCCAACGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATTTGGTGAAAGACTACGAGGCTGGCCTCGAGTACGCCGTCGCTGAGGCGGTGCTCGCGAAAAGGGTAGCGGATGAAGGGACGCCGGAGTTTTTGGTTAAATGGGCCGATTTGGAGGAGCCCACATGGGAGCCCGAGGAGAATGTGGACCCAGAGCTTGTCAAAGCTTTCGAGGGAAGTAACAACCAGGCCCAGCCCAGTAGTAATGGGCCCGCTGTGGTCTTTTCCAATCAGGATAGCCCTAGCCTGTGA | 1149 | 0.5901 | MEAIFVTKPASHSLLLTKLSPNPKHLFPPHQQSFHNIRHKPTRFRPVIAVFQNQHQQDAAAASNHTEDESYGEVKGIIGSRALEAATGMEYLIEWNDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADESALKNLIESDDGRDVDAVDADGRTALLFVAGLGSESCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKVTPKGNPMQFGRRIGLEGVIRVLEGAVFEYAEVQEILERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVKDYEAGLEYAVAEAVLAKRVADEGTPEFLVKWADLEEPTWEPEENVDPELVKAFEGSNNQAQPSSNGPAVVFSNQDSPSL | 382 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma11g00894 | 382 | Pfam | Ankyrin repeats (many copies) | 171 | 226 | IPR002110 | GO:0005515 | |
Gma11g00894 | 382 | PANTHER | SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC | 1 | 363 | IPR030300 | GO:0009416|GO:0009507|GO:0045038|GO:0080085 | |
Gma11g00894 | 382 | SUPERFAMILY | Chromo domain-like | 68 | 121 | IPR016197 | - | |
Gma11g00894 | 382 | MobiDBLite | consensus disorder prediction | 357 | 382 | - | - | |
Gma11g00894 | 382 | Gene3D | - | 68 | 115 | - | - | |
Gma11g00894 | 382 | Gene3D | - | 258 | 307 | - | - | |
Gma11g00894 | 382 | ProSiteProfiles | Ankyrin repeat profile. | 151 | 183 | IPR002110 | GO:0005515 | |
Gma11g00894 | 382 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 314 | 357 | IPR023780 | - | |
Gma11g00894 | 382 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 312 | 368 | IPR000953 | - | |
Gma11g00894 | 382 | SMART | chromo_7 | 311 | 361 | IPR000953 | - | |
Gma11g00894 | 382 | SMART | chromo_7 | 70 | 122 | IPR000953 | - | |
Gma11g00894 | 382 | SMART | chromo_7 | 260 | 310 | IPR000953 | - | |
Gma11g00894 | 382 | SMART | ANK_2a | 185 | 214 | IPR002110 | GO:0005515 | |
Gma11g00894 | 382 | SMART | ANK_2a | 116 | 147 | IPR002110 | GO:0005515 | |
Gma11g00894 | 382 | SMART | ANK_2a | 151 | 180 | IPR002110 | GO:0005515 | |
Gma11g00894 | 382 | ProSiteProfiles | Ankyrin repeat profile. | 185 | 217 | IPR002110 | GO:0005515 | |
Gma11g00894 | 382 | ProSiteProfiles | Ankyrin repeat region circular profile. | 151 | 183 | - | - | |
Gma11g00894 | 382 | Gene3D | - | 116 | 257 | IPR036770 | - | |
Gma11g00894 | 382 | CDD | CD3_cpSRP43_like | 309 | 357 | - | - | |
Gma11g00894 | 382 | CDD | CD2_cpSRP43_like | 260 | 307 | - | - | |
Gma11g00894 | 382 | ProSiteProfiles | Ankyrin repeat region circular profile. | 185 | 217 | - | - | |
Gma11g00894 | 382 | SUPERFAMILY | Chromo domain-like | 310 | 358 | IPR016197 | - | |
Gma11g00894 | 382 | SUPERFAMILY | Ankyrin repeat | 117 | 228 | IPR036770 | - | |
Gma11g00894 | 382 | MobiDBLite | consensus disorder prediction | 341 | 382 | - | - | |
Gma11g00894 | 382 | Gene3D | - | 308 | 359 | - | - | |
Gma11g00894 | 382 | PANTHER | HOMEOBOX PROTEIN WARIAI | 1 | 363 | - | - | |
Gma11g00894 | 382 | SUPERFAMILY | Chromo domain-like | 260 | 308 | IPR016197 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma11g00894 | Gma-Chr11 | 7538313 | 7540013 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma11g00894 | 139 | 226 | CAMTA Transcription Factor Family | AT5G09410 | 38.298 | 8.17e-08 | 52.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma11g00894 | K12271 | - | gmx:100818382 | 747.273 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma12g00220 | 12 | 1735506 | 1737418 | Gma11g00894 | 11 | 7538313 | 7540013 | GST |