Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00888 ATGGCAACCATGGAAGACATGAGCAACATGAGTGGTGAAATTACACTTCCAGGGTTCCGATTCCACCCAACTGAAGAAGAGCTTCTGGATTTCTATCTCAAAAACATGGTTGTTGGCAAGAAACTTCGTTACGATGTTATTGGTTTCCTCAACATCTATCAGCATGATCCATGGGATTTGCCTGGTTTGGCAAAGGTTGGGGAAAGAGAGTGGTACTTCTTCGTGCCAAGGGACAAAAAACATGGAAGCGGTGGAAGGCCAAACCGCACCACTGAAAAAGGGTTCTGGAAAGCCACCGGTTCAGACCGGAAAATAGTTACCTTATCTGATCCAAAGCGCATAATTGGGTTAAGGAAGACCCTGGTTTTCTATCAGGGAAGAGCTCCTAGGGGATGCAAGACCGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGCAAACTACCCAAGGAAATCGTGTTATGCAAGATATATCGAAAGGCAACTTCGTTGAAAGTGCTGGAGCAAAGGGCAGCACTAGAGGAAGAGAGAGAGAAGAAGCAAATGGTTGATAATTCCCCTGCTTCTCCTCCTTCCTCCACGGACACCATGTCCTTTAGCAGCCCACAGGAAGAGCAAAACGTGCCCTTGCCCTTGTTGCAGCATGTTCTTAAGAAAGAGTCTGAAACAACTGAAGACATGGTAGTGTCAAAACAAGAAAAAACAACGAACCAATTGACCTTAAAAGACACCAAAAGCACTTGTGGCACATCACTTCAAATGCCCTTTGGGAAAGAGAAGCTGCCAGACCTTCAGCTTCCTATGCTCTCGGATTGGACCCAAGATACCTTTTGGGCTCAGTTGAATAGTCCTTGGCTCCAAAACTTTACTCCCACCAATATTCTAAACTTCTACTGA 900 0.4533 MATMEDMSNMSGEITLPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYQHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYQGRAPRGCKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEQRAALEEEREKKQMVDNSPASPPSSTDTMSFSSPQEEQNVPLPLLQHVLKKESETTEDMVVSKQEKTTNQLTLKDTKSTCGTSLQMPFGKEKLPDLQLPMLSDWTQDTFWAQLNSPWLQNFTPTNILNFY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00888 299 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Gma11g00888 299 ProSiteProfiles NAC domain profile. 15 161 IPR003441 GO:0003677|GO:0006355
Gma11g00888 299 SUPERFAMILY NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Gma11g00888 299 MobiDBLite consensus disorder prediction 186 206 - -
Gma11g00888 299 MobiDBLite consensus disorder prediction 176 206 - -
Gma11g00888 299 Gene3D NAC domain 24 165 IPR036093 GO:0003677|GO:0006355
Gma11g00888 299 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 9 298 - -
Gma11g00888 299 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00888 Gma-Chr11 7484487 7486203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00888 10 299 NAC Transcription Factor Family AT2G17040 59.247 8.88e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma11g00888 NAM 7.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00888 - - gmx:100816770 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00214 12 1685567 1687980 Gma11g00888 11 7484487 7486203 GST